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raxml-software [2014/12/08 10:06] joguyaraxml-software [2014/12/08 10:06] joguya
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 sudo mkdir -p /export/apps/RAxML/8.0.23/bin sudo mkdir -p /export/apps/RAxML/8.0.23/bin
 sudo cp raxmlHPC-* /export/apps/RAxML/8.0.23/bin/</code> sudo cp raxmlHPC-* /export/apps/RAxML/8.0.23/bin/</code>
 +===== RAxML 8.1.9 =====
 +Information:
 +  * Version: 8.1.9
 +  * Added: December, 2014
 +  * Link: https://github.com/stamatak/standard-RAxML/releases/tag/v8.1.9
 +
 +==== Installation Notes ====
 +  * Download pandaseq 2.8.1, create version specific dir in /export/apps/pandaseq/, compile & install it.<code>
 +git clone https://github.com/stamatak/standard-RAxML.git
 +cd standard-RAxML
 +scl enable devtoolset-1.1 bash
 +git checkout v8.1.9
 +make -f Makefile.gcc
 +rm *.o
 +make -f Makefile.SSE3.gcc
 +rm *.o
 +make -f Makefile.AVX.gcc
 +rm *.o
 +make -f Makefile.PTHREADS.gcc
 +rm *.o
 +make -f Makefile.AVX.PTHREADS.gcc
 +rm *.o
 +make -f Makefile.SSE3.PTHREADS.gcc
 +rm *.o
 +sudo mkdir -p /export/apps/RAxML/8.1.9/bin
 +sudo cp raxmlHPC* /export/apps/RAxML/8.1.9/bin/
 +</code>
 +
 +  * RAxML/8.1.9 module file:<code>#%Module1.0
 +#####################################################################
 +##
 +## RAxML Modulefile
 +## by James Oguya, <j.oguya@cgiar.org>
 +## December, 2014
 +##
 +
 +set     appname         RAxML
 +set     version         8.1.9
 +set     prefix          /export/apps/${appname}/${version}
 +set     exec_prefix     ${prefix}/bin
 +
 +conflict    RAxML
 +
 +prepend-path    PATH            ${exec_prefix}
 +</code>
 +
 +
raxml-software.txt · Last modified: 2018/09/16 07:45 by aorth