User Tools

Site Tools


raxml-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision
Previous revision
Next revisionBoth sides next revision
raxml-software [2014/05/27 12:40] – created aorthraxml-software [2018/09/16 07:02] aorth
Line 1: Line 1:
 ====== RAxML ====== ====== RAxML ======
 +RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. 
  
 ===== Information ===== ===== Information =====
  
-  * Version: 8.0.23+  * Latest Version: 8.2.0
   * Added: June, 2011   * Added: June, 2011
-  * Updated: May 272014+  * Updated: July2015
   * Link: https://github.com/stamatak/standard-RAxML   * Link: https://github.com/stamatak/standard-RAxML
  
-===== Usage =====+=== Usage === 
 +  * Show all available versions of RAxML<code>module avail RAxML</code> 
 +  * Load RAxML module: <code>module load RAxML/8.2.0</code>
  
-=== See versions of RAxML which are available === +=== Installation === 
-<code>module avail RAxML</code> +  *Notes from the sysadmin during installation:<code> 
- +wget https://github.com/stamatak/standard-RAxML/archive/v8.2.0.tar.gz 
-===== Installation ====== +tar -xvf v8.2.0.tar.gz 
-Notes from the sysadmin during installation: +cd standard-RAxML-8.2.0/
- +
-<code>git clone https://github.com/stamatak/standard-RAxML.git +
-cd standard-RAxML +
-scl enable devtoolset-1.1 bash +
-git checkout v8.0.23+
 make -f Makefile.AVX.gcc make -f Makefile.AVX.gcc
 rm *.o rm *.o
 make -f Makefile.AVX.PTHREADS.gcc make -f Makefile.AVX.PTHREADS.gcc
-sudo mkdir -p /export/apps/RAxML/8.0.23/bin +rm *.o 
-sudo cp raxmlHPC-* /export/apps/RAxML/8.0.23/bin/</code>+module load openmpi/1.8.2 
 +make -f Makefile.MPI.gcc 
 +rm *.o 
 +sudo mkdir -p /export/apps/RAxML/8.2.0/bin 
 +sudo cp -v raxmlHPC* /export/apps/RAxML/8.2.0/bin/ 
 +</code>
raxml-software.txt · Last modified: 2018/09/16 07:45 by aorth