Differences

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--- raxml-software [2014/05/27 12:40] – created aorth
+++ raxml-software [2014/12/08 10:24] – [Installation Notes] joguya
@@ Line 1: / Line 1: @@
 ====== RAxML ======
-===== Information =====
+===== RAxML 8.0.23 =====
+==== Information ====
   * Version: 8.0.23
@@ Line 8: / Line 9: @@
   * Link: https://github.com/stamatak/standard-RAxML
-===== Usage =====
+==== Usage ====
 === See versions of RAxML which are available ===
 <code>module avail RAxML</code>
-===== Installation ======
+==== Installation =====
 Notes from the sysadmin during installation:
@@ Line 25: / Line 26: @@
 sudo mkdir -p /export/apps/RAxML/8.0.23/bin
 sudo cp raxmlHPC-* /export/apps/RAxML/8.0.23/bin/</code>
+===== RAxML 8.1.9 =====
+Information:
+  * Version: 8.1.9
+  * Added: December, 2014
+  * Link: https://github.com/stamatak/standard-RAxML/releases/tag/v8.1.9
+==== Installation Notes ====
+  * clone RAxML GitHub repo, create version specific dir in /export/apps/RAxML/, compile & copy binaries<code>
+git clone https://github.com/stamatak/standard-RAxML.git
+cd standard-RAxML
+scl enable devtoolset-1.1 bash
+git checkout v8.1.9
+make -f Makefile.gcc
+rm *.o
+make -f Makefile.SSE3.gcc
+rm *.o
+make -f Makefile.AVX.gcc
+rm *.o
+make -f Makefile.PTHREADS.gcc
+rm *.o
+make -f Makefile.AVX.PTHREADS.gcc
+rm *.o
+make -f Makefile.SSE3.PTHREADS.gcc
+rm *.o
+module load openmpi/1.8.2
+make -f Makefile.MPI.gcc
+rm *.o
+make -f Makefile.SSE3.MPI.gcc
+rm *.o
+make -f Makefile.AVX.MPI.gcc
+rm *.o
+sudo mkdir -p /export/apps/RAxML/8.1.9/bin
+sudo cp raxmlHPC* /export/apps/RAxML/8.1.9/bin/
+</code>
+  * RAxML/8.1.9 module file:<code>#%Module1.0
+#####################################################################
+##
+## RAxML Modulefile
+## by James Oguya, <j.oguya@cgiar.org>
+## December, 2014
+##
+set     appname         RAxML
+set     version         8.1.9
+set     prefix          /export/apps/${appname}/${version}
+set     exec_prefix     ${prefix}/bin
+conflict    RAxML
+prepend-path    PATH            ${exec_prefix}
+</code>