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r-software [2019/08/08 20:49] – aorthr-software [2025/05/12 12:27] (current) – aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 3.6 (3.6.1)+  * Version: 4.4 (4.4.3)
   * Added: February, 2015   * Added: February, 2015
-  * Updated: August, 2019+  * Updated: May, 2025
   * Link: https://www.r-project.org/   * Link: https://www.r-project.org/
  
 ===== Usage ===== ===== Usage =====
  
-See versions of R that are available:+See which versions are available:
 <code>$ module avail R</code> <code>$ module avail R</code>
  
 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load R/3.6+<code>$ module load R/4.4
 $ R</code> $ R</code>
  
-Here is a good resource on [[https://www.osc.edu/resources/getting_started/howto/howto_install_local_r_packages|installing R packages into user libraries]].+Use ''installed.packages()'' to check the list of packages installed in the ILRI environment by default. Here is a good resource on [[https://www.osc.edu/resources/available_software/software_list/r#6|installing R packages into user libraries]] if you need other packages.
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation. Notes from the sysadmin during installation.
- 
-First, compile the main R application with GCC 7 from Red Hat's ''devtoolset-7'' software collection: 
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://cran.r-project.org/src/base/R-3/R-3.6.1.tar.gz +$ wget https://cran.r-project.org/src/base/R-4/R-4.4.3.tar.xz 
-$ tar xf R-3.6.1.tar.gz +$ tar xf R-4.4.3.tar.xz 
-$ cd R-3.6.1 +$ sudo dnf install tcl-devel tk-devel 
-# install packages to enable capabilities in R +$ ./configure --enable-R-shlib --prefix=/export/apps/R/4.4 
-$ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel +$ chrt -b 0 make -j4 
-# install a newer compiler from Red Hat software collections +$ sudo mkdir /export/apps/R/4.4 
-$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ +$ sudo chown aorth /export/apps/R/4.4 
-$ scl enable devtoolset-7 bash +$ make install 
-$ ./configure --enable-R-shlib --prefix=/export/apps/R/3.6 +$ sudo chown -R root:root /export/apps/R/4.4</code>
-$ make -j4 +
-$ sudo mkdir -p /export/apps/R/3.6 +
-$ sudo chown aorth /export/apps/R/3.6 +
-$ make install</code> +
- +
-Then install some common libraries used by our users (to save space, overhead from tens of thousands of header and library files, and users's time): +
r-software.1565297359.txt.gz · Last modified: by aorth