Differences

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--- r-software [2018/11/04 16:06] – aorth
+++ r-software [2025/05/12 12:27] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 3.5.1
+  * Version: 4.4 (4.4.3)
   * Added: February, 2015
-  * Updated: July, 2018
+  * Updated: May, 2025
   * Link: https://www.r-project.org/
 ===== Usage =====
-See versions of R that are available:
+See which versions are available:
 <code>$ module avail R</code>
 Load one version into your environment and run it:
-<code>$ module load R/3.5.1
+<code>$ module load R/4.4
 $ R</code>
-Here is a good resource on [[https://www.osc.edu/resources/getting_started/howto/howto_install_local_r_packages|installing R packages into user libraries]].
+Use ''installed.packages()'' to check the list of packages installed in the ILRI environment by default. Here is a good resource on [[https://www.osc.edu/resources/available_software/software_list/r#6|installing R packages into user libraries]] if you need other packages.
 ===== Installation ======
-Notes from the sysadmin during installation:
+Notes from the sysadmin during installation.
-<code>$ wget http://cran.mirror.ac.za/src/base/R-3/R-3.5.1.tar.gz
+<code>$ cd /tmp
-$ tar xf R-3.5.1.tar.gz
+$ wget https://cran.r-project.org/src/base/R-4/R-4.4.3.tar.xz
-$ cd R-3.5.1
+$ tar xf R-4.4.3.tar.xz
-$ sudo yum install gcc-gfortran gcc-c++ libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel
+$ sudo dnf install tcl-devel tk-devel
-$ ./configure --enable-R-shlib --prefix=/export/apps/R/3.5.1
+$ ./configure --enable-R-shlib --prefix=/export/apps/R/4.4
-$ make -j4
+$ chrt -b 0 make -j4
-$ sudo mkdir -p /export/apps/R/3.5.1
+$ sudo mkdir /export/apps/R/4.4
-$ sudo chown aorth:aorth /export/apps/R/3.5.1
+$ sudo chown aorth /export/apps/R/4.4
 $ make install
-$ sudo chown -R root:root /export/apps/R/3.5.1</code>
+$ sudo chown -R root:root /export/apps/R/4.4</code>