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r-software [2019/01/28 17:52] – aorthr-software [2025/05/12 12:27] (current) – aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 3.5.2+  * Version: 4.4 (4.4.3)
   * Added: February, 2015   * Added: February, 2015
-  * Updated: January, 2019+  * Updated: May, 2025
   * Link: https://www.r-project.org/   * Link: https://www.r-project.org/
  
 ===== Usage ===== ===== Usage =====
  
-See versions of R that are available:+See which versions are available:
 <code>$ module avail R</code> <code>$ module avail R</code>
  
 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load R/3.5+<code>$ module load R/4.4
 $ R</code> $ R</code>
  
-Here is a good resource on [[https://www.osc.edu/resources/getting_started/howto/howto_install_local_r_packages|installing R packages into user libraries]].+Use ''installed.packages()'' to check the list of packages installed in the ILRI environment by default. Here is a good resource on [[https://www.osc.edu/resources/available_software/software_list/r#6|installing R packages into user libraries]] if you need other packages.
  
 ===== Installation ====== ===== Installation ======
-Notes from the sysadmin during installation:+Notes from the sysadmin during installation.
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://cran.r-project.org/src/base/R-3/R-3.5.2.tar.gz +$ wget https://cran.r-project.org/src/base/R-4/R-4.4.3.tar.xz 
-$ tar xf R-3.5.2.tar.gz +$ tar xf R-4.4.3.tar.xz 
-$ cd R-3.5.2 +$ sudo dnf install tcl-devel tk-devel 
-$ sudo yum install gcc-gfortran gcc-c++ libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel +$ ./configure --enable-R-shlib --prefix=/export/apps/R/4.4 
-$ ./configure --enable-R-shlib --prefix=/export/apps/R/3.5 +$ chrt -b 0 make -j4 
-$ make -j4 +$ sudo mkdir /export/apps/R/4.4 
-$ sudo mkdir -p /export/apps/R/3.5 +$ sudo chown aorth /export/apps/R/4.4
-$ sudo chown aorth:aorth /export/apps/R/3.5+
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/R/3.5 +$ sudo chown -R root:root /export/apps/R/4.4</code>
-$ sudo yum remove gcc-c++ libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel</code> +
- +
-Note to future Alan: don't remove ''gcc-gfortran'' after the install because some users need it!+
r-software.1548697923.txt.gz · Last modified: by aorth