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r-software [2023/03/28 13:36] – aorthr-software [2023/05/16 18:26] – aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 4.2 (4.2.0)+  * Version: 4.3 (4.3.0)
   * Added: February, 2015   * Added: February, 2015
-  * Updated: May, 2022+  * Updated: May, 2023
   * Link: https://www.r-project.org/   * Link: https://www.r-project.org/
  
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 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load R/4.2+<code>$ module load R/4.3
 $ R</code> $ R</code>
  
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://cran.r-project.org/src/base/R-4/R-4.2.0.tar.gz +$ wget https://cran.r-project.org/src/base/R-4/R-4.3.0.tar.gz 
-$ tar xf R-4.2.0.tar.gz +$ tar xf R-4.3.0.tar.gz 
-$ cd R-4.2.0 +$ cd R-4.3.0 
-$ ./configure --enable-R-shlib --prefix=/export/apps/R/4.2+$ ./configure --enable-R-shlib --prefix=/export/apps/R/4.3
 $ chrt -b 0 make -j4 $ chrt -b 0 make -j4
-$ sudo mkdir /export/apps/R/4.2 +$ sudo mkdir /export/apps/R/4.3 
-$ sudo chown aorth:aorth /export/apps/R/4.2+$ sudo chown aorth:aorth /export/apps/R/4.3
 $ make install</code> $ make install</code>
  
 Then install some common libraries used by our users because some of them are quite complicated, and installing them globally saves tens of thousands of header files and libraries being installed into user libraries anyways: Then install some common libraries used by our users because some of them are quite complicated, and installing them globally saves tens of thousands of header files and libraries being installed into user libraries anyways:
  
-<code>$ /export/apps/R/4.2/bin/R+<code>$ /export/apps/R/4.3/bin/R
 # > Sys.setenv(MAKEFLAGS = "-j2") # didn't try # > Sys.setenv(MAKEFLAGS = "-j2") # didn't try
 > options(Ncpus = 4) # This does 4 parallel package installs > options(Ncpus = 4) # This does 4 parallel package installs
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 > install_github("lucidif/HiCeekR", repos=BiocManager::repositories()) > install_github("lucidif/HiCeekR", repos=BiocManager::repositories())
 > q() > q()
-$ sudo chown -R root:root /export/apps/R/4.2</code>+$ sudo chown -R root:root /export/apps/R/4.3</code>
r-software.txt · Last modified: 2023/07/12 06:39 by aorth