User Tools

Site Tools


r-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Last revision Both sides next revision
r-software [2021/01/25 12:39]
aorth
r-software [2021/05/05 17:18]
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 4.0 (4.0.3)+  * Version: 4.0 (4.0.5)
   * Added: February, 2015   * Added: February, 2015
-  * Updated: December2020+  * Updated: May2021
   * Link: https://www.r-project.org/   * Link: https://www.r-project.org/
  
Line 26: Line 26:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://cran.r-project.org/src/base/R-4/R-4.0.3.tar.gz +$ wget https://cran.r-project.org/src/base/R-4/R-4.0.5.tar.gz 
-$ cd R-4.0.3+$ tar xf R-4.0.5.tar.gz 
 +$ cd R-4.0.5
 # install packages to enable capabilities in R # install packages to enable capabilities in R
 $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers pcre2-devel.x86_64 $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers pcre2-devel.x86_64
Line 50: Line 51:
 > install.packages("poppr", repos="https://cran.r-project.org") > install.packages("poppr", repos="https://cran.r-project.org")
 > install.packages("vcfR", repos="https://cran.r-project.org") > install.packages("vcfR", repos="https://cran.r-project.org")
 +> install.packages("devtools", repos="https://cran.r-project.org")
 +> library(devtools)
 +> install_github("HenrikBengtsson/TopDom")
 +> install_github("lucidif/HiCeekR", repos=BiocManager::repositories())
 > q() > q()
 $ sudo chown -R root:root /export/apps/R/4.0</code> $ sudo chown -R root:root /export/apps/R/4.0</code>
r-software.txt · Last modified: 2021/05/06 10:14 by aorth