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--- r-software [2020/12/13 08:01] – aorth
+++ r-software [2021/05/05 17:18] – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 4.0 (4.0.3)
+  * Version: 4.0 (4.0.5)
   * Added: February, 2015
-  * Updated: December, 2020
+  * Updated: May, 2021
   * Link: https://www.r-project.org/
@@ Line 26: / Line 26: @@
 <code>$ cd /tmp
-$ wget https://cran.r-project.org/src/base/R-4/R-4.0.3.tar.gz
+$ wget https://cran.r-project.org/src/base/R-4/R-4.0.5.tar.gz
-$ cd R-4.0.3
+$ tar xf R-4.0.5.tar.gz
+$ cd R-4.0.5
 # install packages to enable capabilities in R
 $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers pcre2-devel.x86_64
@@ Line 50: / Line 51: @@
 > install.packages("poppr", repos="https://cran.r-project.org")
 > install.packages("vcfR", repos="https://cran.r-project.org")
+> install.packages("devtools", repos="https://cran.r-project.org")
+> library(devtools)
+> install_github("HenrikBengtsson/TopDom")
+> install_github("lucidif/HiCeekR", repos=BiocManager::repositories())
 > q()
 $ sudo chown -R root:root /export/apps/R/4.0</code>
+**Note:** some of these packages will need system libraries installed, for example:
+  * libgit2-devel.x86_64
+  * libjpeg-turbo-devel.x86_64
+  * gsl-devel.x86_64