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r-software [2020/12/13 08:01]
aorth
r-software [2021/05/05 13:24]
aorth
Line 27: Line 27:
 <code>$ cd /tmp <code>$ cd /tmp
 $ wget https://cran.r-project.org/src/base/R-4/R-4.0.3.tar.gz $ wget https://cran.r-project.org/src/base/R-4/R-4.0.3.tar.gz
 +$ tar xf R-4.0.3.tar.gz
 $ cd R-4.0.3 $ cd R-4.0.3
 # install packages to enable capabilities in R # install packages to enable capabilities in R
Line 50: Line 51:
 > install.packages("poppr", repos="https://cran.r-project.org") > install.packages("poppr", repos="https://cran.r-project.org")
 > install.packages("vcfR", repos="https://cran.r-project.org") > install.packages("vcfR", repos="https://cran.r-project.org")
 +> install.packages("devtools", repos="https://cran.r-project.org")
 +> library(devtools)
 +> install_github("HenrikBengtsson/TopDom")
 +> install_github("lucidif/HiCeekR", repos=BiocManager::repositories())
 > q() > q()
 $ sudo chown -R root:root /export/apps/R/4.0</code> $ sudo chown -R root:root /export/apps/R/4.0</code>
 +
 +**Note:** some of these packages will need system libraries installed, for example:
 +  * libgit2-devel.x86_64
 +  * libjpeg-turbo-devel.x86_64
 +  * gsl-devel.x86_64
r-software.txt · Last modified: 2022/05/24 07:52 by aorth