r-software
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Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
r-software [2020/12/10 19:12] – aorth | r-software [2020/12/13 08:01] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: February, 2015 | * Added: February, 2015 | ||
* Updated: December, 2020 | * Updated: December, 2020 | ||
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Load one version into your environment and run it: | Load one version into your environment and run it: | ||
- | < | + | < |
$ R</ | $ R</ | ||
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< | < | ||
- | $ wget https:// | + | $ wget https:// |
- | $ tar xf R-3.6.3.tar.gz | + | $ cd R-4.0.3 |
- | $ cd R-3.6.3 | + | |
# install packages to enable capabilities in R | # install packages to enable capabilities in R | ||
- | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers | + | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers |
# install a newer compiler from Red Hat software collections | # install a newer compiler from Red Hat software collections | ||
$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
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# R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly | # R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly | ||
$ export CFLAGS=' | $ export CFLAGS=' | ||
- | $ ./configure --enable-R-shlib --prefix=/ | + | $ ./configure --enable-R-shlib --prefix=/ |
$ make -j4 | $ make -j4 | ||
- | $ sudo mv / | + | $ sudo mkdir -p / |
- | $ sudo mkdir / | + | $ sudo chown aorth:aorth / |
- | $ sudo chown aorth:aorth / | + | |
$ make install</ | $ make install</ | ||
Then install some common libraries used by our users because some of them are quite complicated, | Then install some common libraries used by our users because some of them are quite complicated, | ||
- | < | + | < |
> install.packages(' | > install.packages(' | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
> install.packages(" | > install.packages(" | ||
> install.packages(" | > install.packages(" | ||
> install.packages(" | > install.packages(" | ||
> q() | > q() | ||
- | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth