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--- r-software [2020/12/10 18:24] – aorth
+++ r-software [2020/12/10 21:00] – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 3.6 (3.6.1)
+  * Version: 3.6 (3.6.3)
   * Added: February, 2015
-  * Updated: October, 2019
+  * Updated: December, 2020
   * Link: https://www.r-project.org/
@@ Line 26: / Line 26: @@
 <code>$ cd /tmp
-$ wget https://cran.r-project.org/src/base/R-3/R-3.6.1.tar.gz
+$ wget https://cran.r-project.org/src/base/R-3/R-3.6.3.tar.gz
-$ tar xf R-3.6.1.tar.gz
+$ tar xf R-3.6.3.tar.gz
-$ cd R-3.6.1
+$ cd R-3.6.3
 # install packages to enable capabilities in R
 $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers
@@ Line 35: / Line 35: @@
 $ scl enable devtoolset-7 bash
 # R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly
-$ export CFLAGS='-std=gnu99  -g -O2'
+$ export CFLAGS='-std=gnu99 -g -O2'
 $ ./configure --enable-R-shlib --prefix=/export/apps/R/3.6
 $ make -j4
-$ sudo mkdir -p /export/apps/R/3.6
+$ sudo mkdir /export/apps/R/3.6
 $ sudo chown aorth:aorth /export/apps/R/3.6
 $ make install</code>
@@ Line 45: / Line 45: @@
 <code>$ /export/apps/R/3.6/bin/R
+> install.packages('sf', repo='https://cloud.r-project.org', configure.args=c(sf = '--with-gdal-config=/export/apps/gdal/2.4.2/bin/gdal-config'))
 > install.packages("BiocManager", repos="https://cran.r-project.org")
-> install.packages("sf", repo="https://cloud.r-project.org", configure.args=c(sf = "--with-gdal-config=/export/apps/gdal/2.4.2/bin/gdal-config"))
 > install.packages("poppr", repos="https://cran.r-project.org")
-> install.packages("vcfR", repos="https://cran.r-project.org")</code>
+> install.packages("vcfR", repos="https://cran.r-project.org")
+> q()
+$ sudo chown -R root:root /export/apps/R/3.6</code>