r-software
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r-software [2019/10/27 14:02] – aorth | r-software [2021/05/06 10:14] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
Line 15: | Line 15: | ||
Load one version into your environment and run it: | Load one version into your environment and run it: | ||
- | < | + | < |
$ R</ | $ R</ | ||
Line 26: | Line 26: | ||
< | < | ||
- | $ wget https:// | + | $ wget https:// |
- | $ tar xf R-3.6.1.tar.gz | + | $ tar xf R-4.0.5.tar.gz |
- | $ cd R-3.6.1 | + | $ cd R-4.0.5 |
# install packages to enable capabilities in R | # install packages to enable capabilities in R | ||
- | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel | + | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel |
# install a newer compiler from Red Hat software collections | # install a newer compiler from Red Hat software collections | ||
$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
$ scl enable devtoolset-7 bash | $ scl enable devtoolset-7 bash | ||
# R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly | # R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly | ||
- | $ export CFLAGS=' | + | $ export CFLAGS=' |
- | $ ./configure --enable-R-shlib --prefix=/ | + | $ ./configure --enable-R-shlib --prefix=/ |
$ make -j4 | $ make -j4 | ||
- | $ sudo mkdir -p / | + | $ sudo mv / |
- | $ sudo chown aorth:aorth / | + | $ sudo mkdir -p / |
- | $ make install</ | + | $ sudo chown aorth:aorth / |
+ | $ make install | ||
+ | $ sudo rm -rf / | ||
- | Then install some common libraries used by our users (to save space, overhead from tens of thousands of header | + | Then install some common libraries used by our users because some of them are quite complicated, and installing them globally saves tens of thousands of header files and libraries being installed into user libraries anyways: |
+ | < | ||
+ | > install.packages(' | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > library(devtools) | ||
+ | > install_github(" | ||
+ | > install_github(" | ||
+ | > q() | ||
+ | $ sudo chown -R root:root / | ||
+ | |||
+ | **Note:** some of these packages will need system libraries installed, for example: | ||
+ | * libgit2-devel.x86_64 | ||
+ | * libjpeg-turbo-devel.x86_64 | ||
+ | * gsl-devel.x86_64 |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth