r-software
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r-software [2019/08/08 20:49] – aorth | r-software [2020/05/12 13:38] – aorth | ||
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* Version: 3.6 (3.6.1) | * Version: 3.6 (3.6.1) | ||
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
Line 18: | Line 18: | ||
$ R</ | $ R</ | ||
- | Here is a good resource on [[https:// | + | Use '' |
===== Installation ====== | ===== Installation ====== | ||
Line 30: | Line 30: | ||
$ cd R-3.6.1 | $ cd R-3.6.1 | ||
# install packages to enable capabilities in R | # install packages to enable capabilities in R | ||
- | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel | + | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel |
# install a newer compiler from Red Hat software collections | # install a newer compiler from Red Hat software collections | ||
$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
$ scl enable devtoolset-7 bash | $ scl enable devtoolset-7 bash | ||
+ | # R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly | ||
+ | $ export CFLAGS=' | ||
$ ./configure --enable-R-shlib --prefix=/ | $ ./configure --enable-R-shlib --prefix=/ | ||
$ make -j4 | $ make -j4 | ||
$ sudo mkdir -p / | $ sudo mkdir -p / | ||
- | $ sudo chown aorth / | + | $ sudo chown aorth:aorth / |
$ make install</ | $ make install</ | ||
- | Then install some common libraries used by our users (to save space, overhead from tens of thousands of header | + | Then install some common libraries used by our users because some of them are quite complicated, and installing them globally saves tens of thousands of header files and libraries being installed into user libraries anyways: |
+ | < | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth