r-software
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r-software [2019/07/16 06:59] – aorth | r-software [2021/01/25 12:39] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
Line 15: | Line 15: | ||
Load one version into your environment and run it: | Load one version into your environment and run it: | ||
- | < | + | < |
$ R</ | $ R</ | ||
- | Here is a good resource on [[https:// | + | Use '' |
===== Installation ====== | ===== Installation ====== | ||
- | Notes from the sysadmin during installation: | + | Notes from the sysadmin during installation. |
+ | |||
+ | First, compile the main R application with GCC 7 from Red Hat's '' | ||
< | < | ||
- | $ wget https:// | + | $ wget https:// |
- | $ tar xf R-3.5.3.tar.gz | + | $ cd R-4.0.3 |
- | $ cd R-3.5.3 | + | # install packages to enable capabilities in R |
- | $ sudo yum install | + | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel |
- | $ ./configure --enable-R-shlib --prefix=/ | + | # install a newer compiler from Red Hat software collections |
+ | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
+ | $ scl enable devtoolset-7 bash | ||
+ | # R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly | ||
+ | $ export CFLAGS=' | ||
+ | $ ./configure --enable-R-shlib --prefix=/ | ||
$ make -j4 | $ make -j4 | ||
- | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
- | $ sudo chown aorth:aorth / | + | $ sudo chown aorth:aorth / |
- | $ make install | + | $ make install</ |
- | $ sudo chown -R root:root / | + | |
- | $ sudo yum remove gcc-c++ libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel</ | + | Then install some common libraries used by our users because some of them are quite complicated, |
+ | |||
+ | < | ||
+ | > install.packages(' | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > q() | ||
+ | $ sudo chown -R root:root / | ||
- | Note to future Alan: don't remove '' | + | **Note:** some of these packages will need system libraries installed, for example: |
+ | * libgit2-devel.x86_64 | ||
+ | * libjpeg-turbo-devel.x86_64 | ||
+ | * gsl-devel.x86_64 |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth