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r-software [2017/04/28 08:38] – aorthr-software [2017/12/04 08:09] – aorth
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   * Latest version: 3.3.3   * Latest version: 3.3.3
   * Added: February, 2015   * Added: February, 2015
-  * Updated: April, 2017+  * Updated: December, 2017
   * Link: http://www.r-project.org/   * Link: http://www.r-project.org/
  
Line 17: Line 17:
  
 ===== Installation ====== ===== Installation ======
-Notes from the sysadmin during installation (also covers the installation of zlib, bzip2, xz, pcre, and curl, as they are needed by R since ~3.3.x):+Notes from the sysadmin during installation:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget http://zlib.net/zlib-1.2.11.tar.xz 
-$ tar xf zlib-1.2.11.tar.xz 
-$ cd zlib-1.2.11 
-$ ./configure --prefix=/export/apps/zlib/1.2.11 
-$ make 
-$ make check 
-$ sudo mkdir -p /export/apps/zlib/1.2.11 
-$ sudo chown aorth /export/apps/zlib/1.2.11 
-$ make install 
-$ sudo chown -R root:root /export/apps/zlib/1.2.11 
- 
-$ cd /tmp 
-$ wget http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz 
-$ tar xf bzip2-1.0.6.tar.gz 
-$ cd bzip2-1.0.6 
-$ make -f Makefile-libbz2_so 
-$ sudo mkdir -p /export/apps/bzip2/1.0.6 
-$ sudo chown aorth /export/apps/bzip2/1.0.6 
-$ make install PREFIX=/export/apps/bzip2/1.0.6 
-$ sudo chown -R root:root /export/apps/bzip2/1.0.6 
- 
-$ cd /tmp 
-$ wget https://tukaani.org/xz/xz-5.2.3.tar.xz 
-$ tar xf xz-5.2.3.tar.xz 
-$ cd xz-5.2.3 
-$ ./configure --prefix=/export/apps/xz/5.2.3 
-$ make 
-$ make check 
-$ sudo mkdir -p /export/apps/xz/5.2.3 
-$ sudo chown aorth /export/apps/xz/5.2.3 
-$ make install 
-$ sudo chown -R root:root /export/apps/xz/5.2.3 
- 
-$ cd /tmp 
-$ wget http://downloads.sourceforge.net/pcre/pcre-8.40.tar.bz2 
-$ tar xf pcre-8.40.tar.bz2 
-$ cd pcre-8.40 
-$ ./configure --prefix=/export/apps/pcre/8.40 --enable-unicode-properties --enable-pcre16 --enable-pcre32 --enable-pcregrep-libz --enable-pcregrep-libbz2 --enable-pcretest-libreadline 
-$ make 
-$ make check 
-$ sudo mkdir -p /export/apps/pcre/8.40 
-$ sudo chown aorth /export/apps/pcre/8.40 
-$ make install 
-$ sudo chown -R root:root /export/apps/pcre/8.40 
- 
-$ cd /tmp 
-$ wget https://curl.haxx.se/download/curl-7.54.0.tar.gz 
-$ tar xf curl-7.54.0.tar.gz 
-$ cd curl-7.54.0 
-$ ./configure --enable-ipv6 --prefix=/export/apps/curl/7.54.0 
-$ make 
-$ make check 
-$ sudo mkdir -p /export/apps/curl/7.54.0 
-$ sudo chown aorth /export/apps/curl/7.54.0 
-$ make install 
-$ sudo chown -R root:root /export/apps/curl/7.54.0 
- 
-$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/export/apps/zlib/1.2.11/lib:/export/apps/bzip2/1.0.6/lib:/export/apps/xz/5.2.3/lib:/export/apps/pcre/8.40/lib:/export/apps/curl/7.54.0/lib LDFLAGS="$LDFLAGS -L/export/apps/zlib/1.2.11/lib -L/export/apps/bzip2/1.0.6/lib -L/export/apps/xz/5.2.3/lib -L/export/apps/pcre/8.40/lib -L/export/apps/curl/7.54.0/lib" CFLAGS="$CFLAGS -I/export/apps/zlib/1.2.11/include -I/export/apps/bzip2/1.0.6/include -I/export/apps/xz/5.2.3/include -I/export/apps/pcre/8.40/include -I/export/apps/curl/7.54.0/include" 
 $ wget https://cran.r-project.org/src/base/R-3/R-3.3.3.tar.gz $ wget https://cran.r-project.org/src/base/R-3/R-3.3.3.tar.gz
 $ tar xf R-3.3.3.tar.gz $ tar xf R-3.3.3.tar.gz
 $ cd R-3.3.3 $ cd R-3.3.3
 +$ sudo yum install gcc-gfortran gcc-c++ libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel
 $ ./configure --enable-R-shlib --prefix=/export/apps/R/3.3.3 $ ./configure --enable-R-shlib --prefix=/export/apps/R/3.3.3
-$ make -j4 +$ sudo mkdir /export/apps/R/3.3.3
-$ make install +
-$ sudo mkdir -p /export/apps/R/3.3.3+
 $ sudo chown aorth /export/apps/R/3.3.3 $ sudo chown aorth /export/apps/R/3.3.3
-$ sudo chown -R root:root /export/apps/R/3.3.3 +$ make install</code>
-$ exit</code>+
r-software.txt · Last modified: 2023/07/12 06:39 by aorth