r-software
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r-software [2017/04/24 10:06] – [Usage] aorth | r-software [2020/05/12 18:20] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Latest version: 3.3.3 | + | * Version: 3.6 (3.6.1) |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Updated: | + | * Updated: |
- | * Link: http:// | + | * Link: https:// |
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of R which are available | + | See versions of R that are available: |
- | < | + | < |
- | Here is a good resource on [installing R packages into user libraries|https:// | + | Load one version into your environment and run it: |
+ | < | ||
+ | $ R</ | ||
+ | |||
+ | Use '' | ||
===== Installation ====== | ===== Installation ====== | ||
- | Notes from the sysadmin during installation | + | Notes from the sysadmin during installation. |
+ | |||
+ | First, compile | ||
< | < | ||
- | $ wget http://zlib.net/zlib-1.2.11.tar.xz | + | $ wget https://cran.r-project.org/src/base/R-3/R-3.6.1.tar.gz |
- | $ tar xf zlib-1.2.11.tar.xz | + | $ tar xf R-3.6.1.tar.gz |
- | $ cd zlib-1.2.11 | + | $ cd R-3.6.1 |
- | $ ./configure --prefix=/ | + | # install packages to enable capabilities in R |
- | $ make | + | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers |
- | $ make check | + | # install a newer compiler from Red Hat software collections |
- | $ sudo mkdir -p / | + | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ |
- | $ sudo chown aorth / | + | $ scl enable devtoolset-7 bash |
- | $ make install | + | # R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly |
- | $ sudo chown -R root: | + | $ export CFLAGS=' |
+ | $ ./ | ||
+ | $ make -j4 | ||
+ | $ sudo mkdir -p / | ||
+ | $ sudo chown aorth:aorth / | ||
+ | $ make install</code> | ||
- | $ cd /tmp | + | Then install |
- | $ wget http:// | + | |
- | $ tar xf bzip2-1.0.6.tar.gz | + | |
- | $ cd bzip2-1.0.6 | + | |
- | $ make -f Makefile-libbz2_so | + | |
- | $ sudo mkdir -p / | + | |
- | $ sudo chown aorth / | + | |
- | $ make install | + | |
- | $ sudo chown -R root:root / | + | |
- | $ cd /tmp | + | < |
- | $ wget https:// | + | $ R |
- | $ tar xf xz-5.2.3.tar.xz | + | > install.packages(" |
- | $ cd xz-5.2.3 | + | > install.packages(" |
- | $ ./configure --prefix=/ | + | > install.packages(" |
- | $ make | + | > install.packages(" |
- | $ make check | + | |
- | $ sudo mkdir -p / | + | |
- | $ sudo chown aorth /export/ | + | |
- | $ make install | + | |
- | $ sudo chown -R root:root / | + | |
- | + | ||
- | $ cd /tmp | + | |
- | $ wget http:// | + | |
- | $ tar xf pcre-8.40.tar.bz2 | + | |
- | $ cd pcre-8.40 | + | |
- | $ ./configure --prefix=/ | + | |
- | $ make | + | |
- | $ make check | + | |
- | $ sudo mkdir -p / | + | |
- | $ sudo chown aorth / | + | |
- | $ make install | + | |
- | $ sudo chown -R root:root /export/apps/pcre/8.40 | + | |
- | + | ||
- | $ cd /tmp | + | |
- | $ tar xf curl-7.54.0.tar.gz | + | |
- | $ cd curl-7.54.0 | + | |
- | $ ./configure --enable-ipv6 --prefix=/ | + | |
- | $ make | + | |
- | $ make check | + | |
- | $ sudo mkdir -p / | + | |
- | $ sudo chown aorth / | + | |
- | $ make install | + | |
- | $ sudo chown -R root:root / | + | |
- | + | ||
- | $ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/export/apps/zlib/1.2.11/ | + | |
- | $ wget https:// | + | |
- | $ tar xf R-3.3.3.tar.gz | + | |
- | $ cd R-3.3.3 | + | |
- | $ ./configure --enable-R-shlib --prefix=/export/apps/R/3.3.3 | + | |
- | $ make -j4 | + | |
- | $ make install | + | |
- | $ sudo mkdir -p / | + | |
- | $ sudo chown aorth / | + | |
- | $ sudo chown -R root:root / | + | |
- | $ exit</ | + |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth