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r-software [2017/04/23 11:21] – aorthr-software [2017/04/24 10:05] – aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest version: 3.4.0+  * Latest version: 3.3.3
   * Added: February, 2015   * Added: February, 2015
   * Updated: April, 2017   * Updated: April, 2017
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 === See versions of R which are available === === See versions of R which are available ===
 <code>module avail R</code> <code>module avail R</code>
 +
 +A good resource on installing R packages into user libraries is: https://www.osc.edu/resources/getting_started/howto/howto_install_local_r_packages
  
 ===== Installation ====== ===== Installation ======
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 $ tar xf zlib-1.2.11.tar.xz $ tar xf zlib-1.2.11.tar.xz
 $ cd zlib-1.2.11 $ cd zlib-1.2.11
-$ sudo rm -rf /export/apps/zlib/1.2.11 
-$ sudo mkdir -p /export/apps/zlib/1.2.11 
-$ sudo chown aorth /export/apps/zlib/1.2.11 
 $ ./configure --prefix=/export/apps/zlib/1.2.11 $ ./configure --prefix=/export/apps/zlib/1.2.11
 $ make $ make
 $ make check $ make check
 +$ sudo mkdir -p /export/apps/zlib/1.2.11
 +$ sudo chown aorth /export/apps/zlib/1.2.11
 $ make install $ make install
 $ sudo chown -R root:root /export/apps/zlib/1.2.11 $ sudo chown -R root:root /export/apps/zlib/1.2.11
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 $ tar xf bzip2-1.0.6.tar.gz $ tar xf bzip2-1.0.6.tar.gz
 $ cd bzip2-1.0.6 $ cd bzip2-1.0.6
 +$ make -f Makefile-libbz2_so
 $ sudo mkdir -p /export/apps/bzip2/1.0.6 $ sudo mkdir -p /export/apps/bzip2/1.0.6
 $ sudo chown aorth /export/apps/bzip2/1.0.6 $ sudo chown aorth /export/apps/bzip2/1.0.6
-$ make -f Makefile-libbz2_so 
 $ make install PREFIX=/export/apps/bzip2/1.0.6 $ make install PREFIX=/export/apps/bzip2/1.0.6
 $ sudo chown -R root:root /export/apps/bzip2/1.0.6 $ sudo chown -R root:root /export/apps/bzip2/1.0.6
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 $ tar xf xz-5.2.3.tar.xz $ tar xf xz-5.2.3.tar.xz
 $ cd xz-5.2.3 $ cd xz-5.2.3
-$ sudo mkdir -p /export/apps/xz/5.2.3 
-$ sudo chown aorth /export/apps/xz/5.2.3 
 $ ./configure --prefix=/export/apps/xz/5.2.3 $ ./configure --prefix=/export/apps/xz/5.2.3
 $ make $ make
 $ make check $ make check
 +$ sudo mkdir -p /export/apps/xz/5.2.3
 +$ sudo chown aorth /export/apps/xz/5.2.3
 $ make install $ make install
 $ sudo chown -R root:root /export/apps/xz/5.2.3 $ sudo chown -R root:root /export/apps/xz/5.2.3
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 $ tar xf pcre-8.40.tar.bz2 $ tar xf pcre-8.40.tar.bz2
 $ cd pcre-8.40 $ cd pcre-8.40
-$ sudo mkdir -p /export/apps/pcre/8.40 
-$ sudo chown aorth /export/apps/pcre/8.40 
 $ ./configure --prefix=/export/apps/pcre/8.40 --enable-unicode-properties --enable-pcre16 --enable-pcre32 --enable-pcregrep-libz --enable-pcregrep-libbz2 --enable-pcretest-libreadline $ ./configure --prefix=/export/apps/pcre/8.40 --enable-unicode-properties --enable-pcre16 --enable-pcre32 --enable-pcregrep-libz --enable-pcregrep-libbz2 --enable-pcretest-libreadline
 $ make $ make
 $ make check $ make check
 +$ sudo mkdir -p /export/apps/pcre/8.40
 +$ sudo chown aorth /export/apps/pcre/8.40
 $ make install $ make install
 $ sudo chown -R root:root /export/apps/pcre/8.40 $ sudo chown -R root:root /export/apps/pcre/8.40
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 $ tar xf curl-7.54.0.tar.gz $ tar xf curl-7.54.0.tar.gz
 $ cd curl-7.54.0 $ cd curl-7.54.0
-$ sudo mkdir -p /export/apps/curl/7.54.0 
-$ sudo chown aorth /export/apps/curl/7.54.0 
 $ ./configure --enable-ipv6 --prefix=/export/apps/curl/7.54.0 $ ./configure --enable-ipv6 --prefix=/export/apps/curl/7.54.0
 $ make $ make
 $ make check $ make check
 +$ sudo mkdir -p /export/apps/curl/7.54.0
 +$ sudo chown aorth /export/apps/curl/7.54.0
 $ make install $ make install
 $ sudo chown -R root:root /export/apps/curl/7.54.0 $ sudo chown -R root:root /export/apps/curl/7.54.0
  
 $ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/export/apps/zlib/1.2.11/lib:/export/apps/bzip2/1.0.6/lib:/export/apps/xz/5.2.3/lib:/export/apps/pcre/8.40/lib:/export/apps/curl/7.54.0/lib LDFLAGS="$LDFLAGS -L/export/apps/zlib/1.2.11/lib -L/export/apps/bzip2/1.0.6/lib -L/export/apps/xz/5.2.3/lib -L/export/apps/pcre/8.40/lib -L/export/apps/curl/7.54.0/lib" CFLAGS="$CFLAGS -I/export/apps/zlib/1.2.11/include -I/export/apps/bzip2/1.0.6/include -I/export/apps/xz/5.2.3/include -I/export/apps/pcre/8.40/include -I/export/apps/curl/7.54.0/include" $ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/export/apps/zlib/1.2.11/lib:/export/apps/bzip2/1.0.6/lib:/export/apps/xz/5.2.3/lib:/export/apps/pcre/8.40/lib:/export/apps/curl/7.54.0/lib LDFLAGS="$LDFLAGS -L/export/apps/zlib/1.2.11/lib -L/export/apps/bzip2/1.0.6/lib -L/export/apps/xz/5.2.3/lib -L/export/apps/pcre/8.40/lib -L/export/apps/curl/7.54.0/lib" CFLAGS="$CFLAGS -I/export/apps/zlib/1.2.11/include -I/export/apps/bzip2/1.0.6/include -I/export/apps/xz/5.2.3/include -I/export/apps/pcre/8.40/include -I/export/apps/curl/7.54.0/include"
-$ wget https://cran.r-project.org/src/base/R-3/R-3.4.0.tar.gz +$ wget https://cran.r-project.org/src/base/R-3/R-3.3.3.tar.gz 
-$ tar xf R-3.4.0.tar.gz +$ tar xf R-3.3.3.tar.gz 
-$ cd R-3.4.0 +$ cd R-3.3.3 
-$ sudo mkdir -p /export/apps/R/3.4.0 +$ ./configure --enable-R-shlib --prefix=/export/apps/R/3.3.3
-$ sudo chown aorth /export/apps/R/3.4.0 +
-$ ./configure --enable-R-shlib --prefix=/export/apps/R/3.4.0+
 $ make -j4 $ make -j4
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/R/3.4.0+$ sudo mkdir -p /export/apps/R/3.3.3 
 +$ sudo chown aorth /export/apps/R/3.3.3 
 +$ sudo chown -R root:root /export/apps/R/3.3.3
 $ exit</code> $ exit</code>
r-software.txt · Last modified: 2023/07/12 06:39 by aorth