r-software
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r-software [2017/02/06 13:10] – joguya | r-software [2021/05/05 17:18] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Latest version: 3.3.2 | + | * Version: 4.0 (4.0.5) |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Updated: | + | * Updated: |
- | * Link: http:// | + | * Link: https:// |
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of R which are available | + | See versions of R that are available: |
- | < | + | < |
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ R</ | ||
+ | |||
+ | Use '' | ||
===== Installation ====== | ===== Installation ====== | ||
- | Notes from the sysadmin during installation:< | + | Notes from the sysadmin during installation. |
- | - install zlib/1.2.8, R/3.3.2 requires it | + | |
- | $ cd /tmp | + | |
- | $ wget -qO- " | + | |
- | $ sudo mkdir -p / | + | |
- | $ sudo chown -R joguya: | + | |
- | $ scl enable devtoolset-2 bash | + | |
- | $ cd zlib-1.2.8/ | + | |
- | $ ./configure --prefix=/ | + | |
- | $ make -j4 | + | |
- | $ make install | + | |
- | $ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/ | + | |
- | - install bzip2/ | + | First, compile the main R application with GCC 7 from Red Hat's '' |
- | $ wget -qO- http:// | + | |
- | $ cd bzip2-1.0.6/ | + | |
- | $ sudo mkdir -p / | + | |
- | $ sudo chown -R joguya: | + | |
- | $ make -f Makefile-libbz2_so | + | |
- | $ make clean | + | |
- | $ make | + | |
- | $ make -n install PREFIX=/ | + | |
- | $ make install PREFIX=/ | + | |
- | $ export PATH=/ | + | |
- | - install xz instead of liblzma | + | < |
- | $ wget -qO- http://tukaani.org/xz/xz-5.2.2.tar.gz | + | $ wget https://cran.r-project.org/src/base/R-4/R-4.0.5.tar.gz |
- | $ cd xz-5.2.2/ | + | $ tar xf R-4.0.5.tar.gz |
- | $ sudo mkdir -p / | + | $ cd R-4.0.5 |
- | $ sudo chown -R joguya: | + | # install packages to enable capabilities in R |
- | $ ./configure --prefix=/ | + | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel |
+ | # install a newer compiler from Red Hat software collections | ||
+ | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
+ | $ scl enable devtoolset-7 bash | ||
+ | # R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly | ||
+ | $ export | ||
+ | $ ./ | ||
$ make -j4 | $ make -j4 | ||
- | $ make install | + | $ sudo mkdir -p / |
- | $ export PATH=/ | + | $ sudo chown aorth:aorth / |
+ | $ make install</code> | ||
- | - install | + | Then install |
- | $ wget -qO- http:// | + | |
- | $ cd pcre-8.35/ | + | |
- | $ sudo mkdir -p / | + | |
- | $ sudo chown -R joguya: | + | |
- | $ ./configure --prefix=/ | + | |
- | $ make -j4 | + | |
- | $ make check | + | |
- | $ make install | + | |
- | $ export PATH=/ | + | |
- | - install libcurl/ | + | < |
- | $ wget -qO- https:// | + | > install.packages(' |
- | $ cd curl-7.47.1 | + | > install.packages(" |
- | $ sudo mkdir -p / | + | > install.packages(" |
- | $ sudo chown -R joguya: | + | > install.packages(" |
- | $ ./configure --prefix=/export/apps/curl/7.47.1 | + | > install.packages(" |
- | $ ./configure --enable-ipv6 --enable-ldap --enable-ldaps | + | > install.packages(" |
- | $ export PATH=/ | + | > install.packages(" |
+ | > library(devtools) | ||
+ | > install_github(" | ||
+ | > install_github(" | ||
+ | > q() | ||
+ | $ sudo chown -R root: | ||
- | - install R/3.3.2 | + | **Note:** some of these packages will need system libraries installed, for example: |
- | $ cd /tmp/ | + | * libgit2-devel.x86_64 |
- | $ wget -qO- https:// | + | * libjpeg-turbo-devel.x86_64 |
- | $ cd R-3.3.2/ | + | * gsl-devel.x86_64 |
- | $ scl enable devtoolset-2 bash | + | |
- | $ sudo mkdir / | + | |
- | $ sudo chown -R joguya: | + | |
- | $ ./ | + | |
- | $ make -j4 | + | |
- | $ make install | + | |
- | $ sudo chown -R root:root / | + | |
- | </ | + |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth