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r-software [2017/02/06 13:10] – joguyar-software [2017/04/23 11:21] – aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest version: 3.3.2+  * Latest version: 3.4.0
   * Added: February, 2015   * Added: February, 2015
-  * Updated: February, 2017+  * Updated: April, 2017
   * Link: http://www.r-project.org/   * Link: http://www.r-project.org/
  
Line 15: Line 15:
  
 ===== Installation ====== ===== Installation ======
-Notes from the sysadmin during installation:<code> +Notes from the sysadmin during installation (also covers the installation of zlib, bzip2, xz, pcre, and curl, as they are needed by R since ~3.3.x): 
-- install zlib/1.2.8, R/3.3.2 requires it + 
-$ cd /tmp +<code>$ cd /tmp 
-$ wget -qO- "https://downloads.sourceforge.net/project/libpng/zlib/1.2.8/zlib-1.2.8.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Flibpng%2Ffiles%2Fzlib%2F1.2.8%2F&ts=1486285008&use_mirror=netix" | tar zvx +$ wget http://zlib.net/zlib-1.2.11.tar.xz 
-$ sudo mkdir -p /export/apps/zlib/1.2.8 +$ tar xf zlib-1.2.11.tar.xz 
-$ sudo chown -R joguya:joguya /export/apps/zlib/1.2.8 +$ cd zlib-1.2.11 
-$ scl enable devtoolset-2 bash +$ sudo rm -rf /export/apps/zlib/1.2.11 
-$ cd zlib-1.2.8/ +$ sudo mkdir -p /export/apps/zlib/1.2.11 
-$ ./configure --prefix=/export/apps/zlib/1.2.8 +$ sudo chown aorth /export/apps/zlib/1.2.11 
-$ make -j4+$ ./configure --prefix=/export/apps/zlib/1.2.11 
 +$ make 
 +$ make check
 $ make install $ make install
-$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/export/apps/zlib/1.2.8/lib LDFLAGS="-L/export/apps/zlib/1.2.8/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include"+$ sudo chown -R root:root /export/apps/zlib/1.2.11
  
-- install bzip2/1.0.6 +$ cd /tmp 
-$ wget -qO- http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz | tar xzv +$ wget http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz 
-$ cd bzip2-1.0.6/ +$ tar xf bzip2-1.0.6.tar.gz 
-$ sudo mkdir -p /export/apps/bzip/1.0.6 +$ cd bzip2-1.0.6 
-$ sudo chown -R joguya:joguya /export/apps/bzip/1.0.6+$ sudo mkdir -p /export/apps/bzip2/1.0.6 
 +$ sudo chown aorth /export/apps/bzip2/1.0.6
 $ make -f Makefile-libbz2_so $ make -f Makefile-libbz2_so
-$ make  clean +$ make install PREFIX=/export/apps/bzip2/1.0.6 
-$ make +$ sudo chown -R root:root /export/apps/bzip2/1.0.6
-$ make -n install PREFIX=/export/apps/bzip/1.0.6/ +
-$ make install PREFIX=/export/apps/bzip/1.0.6/ +
-$ export PATH=/export/apps/bzip/1.0.6/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib/" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include"+
  
-- install xz instead of liblzma +$ cd /tmp 
-$ wget -qO- http://tukaani.org/xz/xz-5.2.2.tar.gz | tar xzv +$ wget https://tukaani.org/xz/xz-5.2.3.tar.xz 
-$ cd xz-5.2.2/ +$ tar xf xz-5.2.3.tar.xz 
-$ sudo mkdir -p /export/apps/xz/5.2.2 +$ cd xz-5.2.3 
-$ sudo chown -R joguya:joguya /export/apps/xz/5.2.2 +$ sudo mkdir -p /export/apps/xz/5.2.3 
-$ ./configure --prefix=/export/apps/xz/5.2.2 +$ sudo chown aorth /export/apps/xz/5.2.3 
-$ make -j4+$ ./configure --prefix=/export/apps/xz/5.2.3 
 +$ make 
 +$ make check
 $ make install $ make install
-$ export PATH=/export/apps/bzip/1.0.6/bin:/export/apps/xz/5.2.2/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:/export/apps/xz/5.2.2/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib -L/export/apps/xz/5.2.2/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include -I/export/apps/xz/5.2.2/include"+$ sudo chown -R root:root /export/apps/xz/5.2.3
  
-- install pcre/8.35 +$ cd /tmp 
-$ wget -qO- http://downloads.sourceforge.net/pcre/pcre-8.35.tar.bz2 | tar xjv +$ wget http://downloads.sourceforge.net/pcre/pcre-8.40.tar.bz2 
-$ cd pcre-8.35/ +$ tar xf pcre-8.40.tar.bz2 
-$ sudo mkdir -p /export/apps/pcre/8.35 +$ cd pcre-8.40 
-$ sudo chown -R joguya:joguya /export/apps/pcre/8.35 +$ sudo mkdir -p /export/apps/pcre/8.40 
-$ ./configure --prefix=/export/apps/pcre/8.35 --enable-unicode-properties --enable-pcre16 --enable-pcre32 --enable-pcregrep-libz --enable-pcregrep-libbz2 --enable-pcretest-libreadline --enable-static +$ sudo chown aorth /export/apps/pcre/8.40 
-$ make -j4+$ ./configure --prefix=/export/apps/pcre/8.40 --enable-unicode-properties --enable-pcre16 --enable-pcre32 --enable-pcregrep-libz --enable-pcregrep-libbz2 --enable-pcretest-libreadline 
 +$ make
 $ make check $ make check
 $ make install $ make install
-$ export PATH=/export/apps/bzip/1.0.6/bin:/export/apps/xz/5.2.2/bin:/export/apps/pcre/8.35/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:/export/apps/xz/5.2.2/lib:/export/apps/pcre/8.35/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib -L/export/apps/xz/5.2.2/lib -L/export/apps/pcre/8.35/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include -I/export/apps/xz/5.2.2/include -I/export/apps/pcre/8.35/include"+$ sudo chown -R root:root /export/apps/pcre/8.40
  
-- install libcurl/7.47 +$ cd /tmp 
-$ wget -qO- https://curl.haxx.se/download/curl-7.47.1.tar.gz | tar xvz +$ tar xf curl-7.54.0.tar.gz 
-$ cd curl-7.47.1 +$ cd curl-7.54.0 
-$ sudo mkdir -p /export/apps/curl/7.47.1/ +$ sudo mkdir -p /export/apps/curl/7.54.0 
-$ sudo chown -R joguya:joguya /export/apps/curl/7.47.1/ +$ sudo chown aorth /export/apps/curl/7.54.0 
-$ ./configure --prefix=/export/apps/curl/7.47.1 +$ ./configure --enable-ipv6 --prefix=/export/apps/curl/7.54.0 
-$ ./configure --enable-ipv6 --enable-ldap --enable-ldaps --with-nghttp2 --prefix=/export/apps/curl/7.47.1 +$ make 
-$ export PATH=/export/apps/bzip/1.0.6/bin:/export/apps/xz/5.2.2/bin:/export/apps/pcre/8.35/bin:/export/apps/curl/7.47.1/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:/export/apps/xz/5.2.2/lib:/export/apps/pcre/8.35/lib:/export/apps/curl/7.47.1/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib -L/export/apps/xz/5.2.2/lib -L/export/apps/pcre/8.35/lib -L/export/apps/curl/7.47.1/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include -I/export/apps/xz/5.2.2/include -I/export/apps/pcre/8.35/include -I/export/apps/curl/7.47.1/include"+$ make check 
 +$ make install 
 +$ sudo chown -R root:root /export/apps/curl/7.54.0
  
-- install R/3.3.2 +$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/export/apps/zlib/1.2.11/lib:/export/apps/bzip2/1.0.6/lib:/export/apps/xz/5.2.3/lib:/export/apps/pcre/8.40/lib:/export/apps/curl/7.54.0/lib LDFLAGS="$LDFLAGS -L/export/apps/zlib/1.2.11/lib -L/export/apps/bzip2/1.0.6/lib -L/export/apps/xz/5.2.3/lib -L/export/apps/pcre/8.40/lib -L/export/apps/curl/7.54.0/lib" CFLAGS="$CFLAGS -I/export/apps/zlib/1.2.11/include -I/export/apps/bzip2/1.0.6/include -I/export/apps/xz/5.2.3/include -I/export/apps/pcre/8.40/include -I/export/apps/curl/7.54.0/include" 
-$ cd /tmp/ +$ wget https://cran.r-project.org/src/base/R-3/R-3.4.0.tar.gz 
-$ wget -qO- https://cran.r-project.org/src/base/R-3/R-3.3.2.tar.gz | tar zxv +$ tar xf R-3.4.0.tar.gz 
-$ cd R-3.3.2/ +$ cd R-3.4.0 
-$ scl enable devtoolset-2 bash +$ sudo mkdir -p /export/apps/R/3.4.0 
-$ sudo mkdir /export/apps/R/3.3.2 +$ sudo chown aorth /export/apps/R/3.4.0 
-$ sudo chown -R joguya:joguya /export/apps/R/3.3.2 +$ ./configure --enable-R-shlib --prefix=/export/apps/R/3.4.0
-$ ./configure --enable-R-static-lib --prefix=/export/apps/R/3.3.2+
 $ make -j4 $ make -j4
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/R/3.3.2 +$ sudo chown -R root:root /export/apps/R/3.4.0 
-</code>+$ exit</code>
r-software.txt · Last modified: 2023/07/12 06:39 by aorth