r-software
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r-software [2016/04/22 12:00] – joguya | r-software [2022/05/24 07:52] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Latest version: 3.2.5 | + | * Version: 4.2 (4.2.0) |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Updated: | + | * Updated: |
- | * Link: http:// | + | * Link: https:// |
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of R which are available | + | See which versions |
- | < | + | < |
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ R</ | ||
+ | |||
+ | Use '' | ||
===== Installation ====== | ===== Installation ====== | ||
- | Notes from the sysadmin during installation:< | + | Notes from the sysadmin during installation. |
- | $ cd /tmp | + | |
- | $ wget http://cran.mirror.ac.za/ | + | First, compile the main R application with GCC 7 from Red Hat's '' |
- | $ tar -xvf R-3.2.5.tar.gz | + | |
- | $ cd R-3.2.5 | + | < |
- | $ scl enable | + | $ wget https://cran.r-project.org/ |
- | $ sudo mkdir -p / | + | $ tar xf R-4.2.0.tar.gz |
- | $ sudo chown joguya:joguya | + | $ cd R-4.2.0 |
- | $ ./configure --enable-R-shlib --prefix=/export/apps/R/3.2.5 | + | $ ./configure --enable-R-shlib --prefix=/ |
- | $ make -j4 | + | $ chrt -b 0 make -j4 |
- | $ make install | + | $ sudo mkdir / |
- | $ sudo chown -R root:root / | + | $ sudo chown aorth:aorth / |
- | </ | + | $ make install</ |
+ | |||
+ | Then install some common libraries used by our users because some of them are quite complicated, | ||
+ | |||
+ | < | ||
+ | # > Sys.setenv(MAKEFLAGS = "-j2") # didn't try | ||
+ | > options(Ncpus = 4) # This does 4 parallel package installs | ||
+ | > install.packages(' | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > library(devtools) | ||
+ | > install_github(" | ||
+ | > install_github(" | ||
+ | > q() | ||
+ | $ sudo chown -R root:root / |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth