r-software
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
r-software [2016/04/22 12:00] – joguya | r-software [2021/05/05 17:18] – aorth | ||
---|---|---|---|
Line 4: | Line 4: | ||
===== Information ===== | ===== Information ===== | ||
- | * Latest version: 3.2.5 | + | * Version: 4.0 (4.0.5) |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Updated: | + | * Updated: |
- | * Link: http:// | + | * Link: https:// |
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of R which are available | + | See versions of R that are available: |
- | < | + | < |
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ R</ | ||
+ | |||
+ | Use '' | ||
===== Installation ====== | ===== Installation ====== | ||
- | Notes from the sysadmin during installation:< | + | Notes from the sysadmin during installation. |
- | $ cd /tmp | + | |
- | $ wget http://cran.mirror.ac.za/ | + | First, compile the main R application with GCC 7 from Red Hat's '' |
- | $ tar -xvf R-3.2.5.tar.gz | + | |
- | $ cd R-3.2.5 | + | < |
- | $ scl enable devtoolset-2 bash | + | $ wget https://cran.r-project.org/ |
- | $ sudo mkdir -p / | + | $ tar xf R-4.0.5.tar.gz |
- | $ sudo chown joguya: | + | $ cd R-4.0.5 |
- | $ ./configure --enable-R-shlib --prefix=/ | + | # install packages to enable capabilities in R |
+ | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel glibc-headers pcre2-devel.x86_64 | ||
+ | # install a newer compiler from Red Hat software collections | ||
+ | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
+ | $ scl enable devtoolset-7 bash | ||
+ | # R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly | ||
+ | $ export | ||
+ | $ ./configure --enable-R-shlib --prefix=/ | ||
$ make -j4 | $ make -j4 | ||
- | $ make install | + | $ sudo mkdir -p / |
- | $ sudo chown -R root:root / | + | $ sudo chown aorth:aorth / |
- | </ | + | $ make install</ |
+ | |||
+ | Then install some common libraries used by our users because some of them are quite complicated, | ||
+ | |||
+ | < | ||
+ | > install.packages(' | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > library(devtools) | ||
+ | > install_github(" | ||
+ | > install_github(" | ||
+ | > q() | ||
+ | $ sudo chown -R root:root / | ||
+ | |||
+ | **Note:** some of these packages will need system libraries installed, for example: | ||
+ | * libgit2-devel.x86_64 | ||
+ | * libjpeg-turbo-devel.x86_64 | ||
+ | * gsl-devel.x86_64 |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth