r-software
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r-software [2015/07/28 13:43] – joguya | r-software [2019/10/27 13:45] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Latest version: 3.2.1 | + | * Version: 3.6 (3.6.1) |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Link: http:// | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of R which are available | + | See versions of R that are available: |
- | < | + | < |
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ R</ | ||
+ | |||
+ | Here is a good resource on [[https:// | ||
===== Installation ====== | ===== Installation ====== | ||
- | Notes from the sysadmin during installation: | + | Notes from the sysadmin during installation. |
+ | |||
+ | First, compile the main R application with GCC 7 from Red Hat's '' | ||
< | < | ||
- | $ wget http://cran.uni-muenster.de/ | + | $ wget https://cran.r-project.org/ |
- | $ tar xf R-3.2.1.tar.gz | + | $ tar xf R-3.6.1.tar.gz |
- | $ cd R-3.2.1 | + | $ cd R-3.6.1 |
- | $ scl enable devtoolset-2 bash | + | # install packages to enable capabilities in R |
- | $ CC=clang ./configure --enable-R-shlib --prefix=/ | + | $ sudo yum install libX11-devel libXaw-devel bzip2-devel libcurl-devel xz-devel readline-devel |
+ | # install a newer compiler from Red Hat software collections | ||
+ | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
+ | $ scl enable devtoolset-7 bash | ||
+ | # R packages are written in C99 and GCC 7 uses a newer standard by default, so tell configure script to use C99 explicitly | ||
+ | $ export CFLAGS=' | ||
+ | $ ./configure --enable-R-shlib --prefix=/ | ||
$ make -j4 | $ make -j4 | ||
- | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
- | $ sudo chown aorth:aorth / | + | $ sudo chown aorth:aorth / |
- | $ sudo chown root:root / | + | $ make install</ |
+ | |||
+ | Then install some common libraries used by our users (to save space, overhead from tens of thousands of header and library files, and users' |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth