ILRI Research Computing

User Tools

Site Tools

You are here: start » r-software
r-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
Next revisionBoth sides next revision
r-software [2015/07/28 13:43] – joguyar-software [2017/02/06 13:10] – joguya
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Latest version: 3.2.1+  * Latest version: 3.3.2
   * Added: February, 2015   * Added: February, 2015
 +  * Updated: February, 2017
   * Link: http://www.r-project.org/   * Link: http://www.r-project.org/
  
Line 14: Line 15:
  
 ===== Installation ====== ===== Installation ======
-Notes from the sysadmin during installation:+Notes from the sysadmin during installation:<code> 
 +- install zlib/1.2.8, R/3.3.2 requires it 
 +$ cd /tmp 
 +$ wget -qO- "https://downloads.sourceforge.net/project/libpng/zlib/1.2.8/zlib-1.2.8.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Flibpng%2Ffiles%2Fzlib%2F1.2.8%2F&ts=1486285008&use_mirror=netix" | tar zvx 
 +$ sudo mkdir -p /export/apps/zlib/1.2.8 
 +$ sudo chown -R joguya:joguya /export/apps/zlib/1.2.8 
 +$ scl enable devtoolset-2 bash 
 +$ cd zlib-1.2.8/ 
 +$ ./configure --prefix=/export/apps/zlib/1.2.8 
 +$ make -j4 
 +$ make install 
 +$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/export/apps/zlib/1.2.8/lib LDFLAGS="-L/export/apps/zlib/1.2.8/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include" 
 + 
 +- install bzip2/1.0.6 
 +$ wget -qO- http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz | tar xzv 
 +$ cd bzip2-1.0.6/ 
 +$ sudo mkdir -p /export/apps/bzip/1.0.6 
 +$ sudo chown -R joguya:joguya /export/apps/bzip/1.0.6 
 +$ make -f Makefile-libbz2_so 
 +$ make  clean 
 +$ make 
 +$ make -n install PREFIX=/export/apps/bzip/1.0.6/ 
 +$ make install PREFIX=/export/apps/bzip/1.0.6/ 
 +$ export PATH=/export/apps/bzip/1.0.6/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib/" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include" 
 + 
 +- install xz instead of liblzma 
 +$ wget -qO- http://tukaani.org/xz/xz-5.2.2.tar.gz | tar xzv 
 +$ cd xz-5.2.2/ 
 +$ sudo mkdir -p /export/apps/xz/5.2.2 
 +$ sudo chown -R joguya:joguya /export/apps/xz/5.2.2 
 +$ ./configure --prefix=/export/apps/xz/5.2.2 
 +$ make -j4 
 +$ make install 
 +$ export PATH=/export/apps/bzip/1.0.6/bin:/export/apps/xz/5.2.2/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:/export/apps/xz/5.2.2/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib -L/export/apps/xz/5.2.2/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include -I/export/apps/xz/5.2.2/include" 
 + 
 +- install pcre/8.35 
 +$ wget -qO- http://downloads.sourceforge.net/pcre/pcre-8.35.tar.bz2 | tar xjv 
 +$ cd pcre-8.35/ 
 +$ sudo mkdir -p /export/apps/pcre/8.35 
 +$ sudo chown -R joguya:joguya /export/apps/pcre/8.35 
 +$ ./configure --prefix=/export/apps/pcre/8.35 --enable-unicode-properties --enable-pcre16 --enable-pcre32 --enable-pcregrep-libz --enable-pcregrep-libbz2 --enable-pcretest-libreadline --enable-static 
 +$ make -j4 
 +$ make check 
 +$ make install 
 +$ export PATH=/export/apps/bzip/1.0.6/bin:/export/apps/xz/5.2.2/bin:/export/apps/pcre/8.35/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:/export/apps/xz/5.2.2/lib:/export/apps/pcre/8.35/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib -L/export/apps/xz/5.2.2/lib -L/export/apps/pcre/8.35/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include -I/export/apps/xz/5.2.2/include -I/export/apps/pcre/8.35/include" 
 + 
 +- install libcurl/7.47 
 +$ wget -qO- https://curl.haxx.se/download/curl-7.47.1.tar.gz | tar xvz 
 +$ cd curl-7.47.1 
 +$ sudo mkdir -p /export/apps/curl/7.47.1/ 
 +$ sudo chown -R joguya:joguya /export/apps/curl/7.47.1/ 
 +$ ./configure --prefix=/export/apps/curl/7.47.1 
 +$ ./configure --enable-ipv6 --enable-ldap --enable-ldaps --with-nghttp2 --prefix=/export/apps/curl/7.47.1 
 +$ export PATH=/export/apps/bzip/1.0.6/bin:/export/apps/xz/5.2.2/bin:/export/apps/pcre/8.35/bin:/export/apps/curl/7.47.1/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:/export/apps/xz/5.2.2/lib:/export/apps/pcre/8.35/lib:/export/apps/curl/7.47.1/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib -L/export/apps/xz/5.2.2/lib -L/export/apps/pcre/8.35/lib -L/export/apps/curl/7.47.1/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include -I/export/apps/xz/5.2.2/include -I/export/apps/pcre/8.35/include -I/export/apps/curl/7.47.1/include"
  
-<code>$ cd /tmp +- install R/3.3.2 
-$ wget http://cran.uni-muenster.de/src/base/R-3/R-3.2.1.tar.gz +$ cd /tmp/ 
-$ tar xf R-3.2.1.tar.gz  +$ wget -qO- https://cran.r-project.org/src/base/R-3/R-3.3.2.tar.gz | tar zxv 
-$ cd R-3.2.1+$ cd R-3.3.2/
 $ scl enable devtoolset-2 bash $ scl enable devtoolset-2 bash
-$ CC=clang ./configure --enable-R-shlib --prefix=/export/apps/R/3.2.1+$ sudo mkdir /export/apps/R/3.3.2 
 +$ sudo chown -R joguya:joguya /export/apps/R/3.3.2 
 +$ ./configure --enable-R-static-lib --prefix=/export/apps/R/3.3.2
 $ make -j4 $ make -j4
-$ sudo mkdir -p /export/apps/R/3.2.1 +$ make install 
-$ sudo chown aorth:aorth /export/apps/R/3.2.1 +$ sudo chown -R root:root /export/apps/R/3.3.2 
-$ sudo chown root:root /export/apps/R/3.2.1</code>+</code>
r-software.txt · Last modified: 2023/07/12 06:39 by aorth