r-software
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r-software [2015/02/19 07:01] – created aorth | r-software [2023/03/28 13:36] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: February, 2015 | * Added: February, 2015 | ||
- | * Link: http:// | + | |
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of R which are available | + | See which versions |
- | < | + | < |
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ R</ | ||
+ | |||
+ | Use '' | ||
===== Installation ====== | ===== Installation ====== | ||
- | Notes from the sysadmin during installation: | + | Notes from the sysadmin during installation. |
+ | |||
+ | First, compile the main R application: | ||
< | < | ||
- | $ wget http://cran.uni-muenster.de/ | + | $ wget https://cran.r-project.org/ |
- | $ tar xf R-3.1.2.tar.gz | + | $ tar xf R-4.2.0.tar.gz |
- | $ cd R-3.1.2 | + | $ cd R-4.2.0 |
- | $ scl enable devtoolset-2 bash | + | $ ./configure --enable-R-shlib --prefix=/ |
- | $ CC=clang | + | $ chrt -b 0 make -j4 |
- | $ make -j4 | + | $ sudo mkdir / |
- | $ sudo mkdir -p / | + | $ sudo chown aorth:aorth / |
- | $ sudo chown aorth:aorth / | + | $ make install</ |
- | $ sudo chown root:root / | + | |
+ | Then install some common libraries used by our users because some of them are quite complicated, | ||
+ | |||
+ | < | ||
+ | # > Sys.setenv(MAKEFLAGS = " | ||
+ | > options(Ncpus = 4) # This does 4 parallel package installs | ||
+ | > install.packages(' | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > install.packages(" | ||
+ | > library(devtools) | ||
+ | > install_github(" | ||
+ | > install_github(" | ||
+ | > q() | ||
+ | $ sudo chown -R root:root / |
r-software.txt · Last modified: 2023/07/12 06:39 by aorth