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r-software [2015/02/19 07:01] – created aorthr-software [2017/02/06 13:10] – joguya
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 ===== Information ===== ===== Information =====
  
-  * Version: 3.1.2+  * Latest version: 3.3.2
   * Added: February, 2015   * Added: February, 2015
 +  * Updated: February, 2017
   * Link: http://www.r-project.org/   * Link: http://www.r-project.org/
  
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 ===== Installation ====== ===== Installation ======
-Notes from the sysadmin during installation:+Notes from the sysadmin during installation:<code> 
 +- install zlib/1.2.8, R/3.3.2 requires it 
 +$ cd /tmp 
 +$ wget -qO- "https://downloads.sourceforge.net/project/libpng/zlib/1.2.8/zlib-1.2.8.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Flibpng%2Ffiles%2Fzlib%2F1.2.8%2F&ts=1486285008&use_mirror=netix" | tar zvx 
 +$ sudo mkdir -p /export/apps/zlib/1.2.8 
 +$ sudo chown -R joguya:joguya /export/apps/zlib/1.2.8 
 +$ scl enable devtoolset-2 bash 
 +$ cd zlib-1.2.8/ 
 +$ ./configure --prefix=/export/apps/zlib/1.2.8 
 +$ make -j4 
 +$ make install 
 +$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/export/apps/zlib/1.2.8/lib LDFLAGS="-L/export/apps/zlib/1.2.8/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include" 
 + 
 +- install bzip2/1.0.6 
 +$ wget -qO- http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz | tar xzv 
 +$ cd bzip2-1.0.6/ 
 +$ sudo mkdir -p /export/apps/bzip/1.0.6 
 +$ sudo chown -R joguya:joguya /export/apps/bzip/1.0.6 
 +$ make -f Makefile-libbz2_so 
 +$ make  clean 
 +$ make 
 +$ make -n install PREFIX=/export/apps/bzip/1.0.6/ 
 +$ make install PREFIX=/export/apps/bzip/1.0.6/ 
 +$ export PATH=/export/apps/bzip/1.0.6/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib/" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include" 
 + 
 +- install xz instead of liblzma 
 +$ wget -qO- http://tukaani.org/xz/xz-5.2.2.tar.gz | tar xzv 
 +$ cd xz-5.2.2/ 
 +$ sudo mkdir -p /export/apps/xz/5.2.2 
 +$ sudo chown -R joguya:joguya /export/apps/xz/5.2.2 
 +$ ./configure --prefix=/export/apps/xz/5.2.2 
 +$ make -j4 
 +$ make install 
 +$ export PATH=/export/apps/bzip/1.0.6/bin:/export/apps/xz/5.2.2/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:/export/apps/xz/5.2.2/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib -L/export/apps/xz/5.2.2/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include -I/export/apps/xz/5.2.2/include" 
 + 
 +- install pcre/8.35 
 +$ wget -qO- http://downloads.sourceforge.net/pcre/pcre-8.35.tar.bz2 | tar xjv 
 +$ cd pcre-8.35/ 
 +$ sudo mkdir -p /export/apps/pcre/8.35 
 +$ sudo chown -R joguya:joguya /export/apps/pcre/8.35 
 +$ ./configure --prefix=/export/apps/pcre/8.35 --enable-unicode-properties --enable-pcre16 --enable-pcre32 --enable-pcregrep-libz --enable-pcregrep-libbz2 --enable-pcretest-libreadline --enable-static 
 +$ make -j4 
 +$ make check 
 +$ make install 
 +$ export PATH=/export/apps/bzip/1.0.6/bin:/export/apps/xz/5.2.2/bin:/export/apps/pcre/8.35/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:/export/apps/xz/5.2.2/lib:/export/apps/pcre/8.35/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib -L/export/apps/xz/5.2.2/lib -L/export/apps/pcre/8.35/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include -I/export/apps/xz/5.2.2/include -I/export/apps/pcre/8.35/include" 
 + 
 +- install libcurl/7.47 
 +$ wget -qO- https://curl.haxx.se/download/curl-7.47.1.tar.gz | tar xvz 
 +$ cd curl-7.47.1 
 +$ sudo mkdir -p /export/apps/curl/7.47.1/ 
 +$ sudo chown -R joguya:joguya /export/apps/curl/7.47.1/ 
 +$ ./configure --prefix=/export/apps/curl/7.47.1 
 +$ ./configure --enable-ipv6 --enable-ldap --enable-ldaps --with-nghttp2 --prefix=/export/apps/curl/7.47.1 
 +$ export PATH=/export/apps/bzip/1.0.6/bin:/export/apps/xz/5.2.2/bin:/export/apps/pcre/8.35/bin:/export/apps/curl/7.47.1/bin:$PATH LD_LIBRARY_PATH=/export/apps/zlib/1.2.8/lib:/export/apps/bzip/1.0.6/lib:/export/apps/xz/5.2.2/lib:/export/apps/pcre/8.35/lib:/export/apps/curl/7.47.1/lib:$LD_LIBRARY_PATH LDFLAGS="-L/export/apps/zlib/1.2.8/lib -L/export/apps/bzip/1.0.6/lib -L/export/apps/xz/5.2.2/lib -L/export/apps/pcre/8.35/lib -L/export/apps/curl/7.47.1/lib" CFLAGS="-I/export/apps/zlib/1.2.8/include -I/export/apps/bzip/1.0.6/include -I/export/apps/xz/5.2.2/include -I/export/apps/pcre/8.35/include -I/export/apps/curl/7.47.1/include"
  
-<code>$ cd /tmp +- install R/3.3.2 
-$ wget http://cran.uni-muenster.de/src/base/R-3/R-3.1.2.tar.gz +$ cd /tmp/ 
-$ tar xf R-3.1.2.tar.gz  +$ wget -qO- https://cran.r-project.org/src/base/R-3/R-3.3.2.tar.gz | tar zxv 
-$ cd R-3.1.2+$ cd R-3.3.2/
 $ scl enable devtoolset-2 bash $ scl enable devtoolset-2 bash
-$ CC=clang ./configure --enable-R-shlib --prefix=/export/apps/R/3.1.2+$ sudo mkdir /export/apps/R/3.3.2 
 +$ sudo chown -R joguya:joguya /export/apps/R/3.3.2 
 +$ ./configure --enable-R-static-lib --prefix=/export/apps/R/3.3.2
 $ make -j4 $ make -j4
-$ sudo mkdir -p /export/apps/R/3.1.2 +$ make install 
-$ sudo chown aorth:aorth /export/apps/R/3.1.2 +$ sudo chown -R root:root /export/apps/R/3.3.2 
-$ sudo chown root:root /export/apps/R/3.1.2</code>+</code>
r-software.txt · Last modified: 2023/07/12 06:39 by aorth