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quast-software [2019/01/29 14:31]
aorth
quast-software [2020/04/07 08:27] (current)
aorth
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 ===== Information ===== ===== Information =====
  
-  * Latest Version: 4.5+  * Latest Version: 5.0.2
   * Added: September, 2014   * Added: September, 2014
-  * Updated: January2019+  * Updated: April2020
   * Link: http://quast.sourceforge.net/quast   * Link: http://quast.sourceforge.net/quast
  
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 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load quast/4.5+<code>$ module load quast/5.0.2
 $ quast.py --help</code> $ quast.py --help</code>
  
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://downloads.sourceforge.net/project/quast/quast-4.5.tar.gz +$ wget https://downloads.sourceforge.net/project/quast/quast-5.0.2.tar.gz 
-$ tar xf quast-4.5.tar.gz +$ tar xf quast-5.0.2.tar.gz 
-$ cd quast-4.+$ cd quast-5.0.2 
-$ sudo mkdir -p /export/apps/quast/4.+$ sudo mkdir -p /export/apps/quast/5.0.2 
-$ sudo chown aorth /export/apps/quast/4.5 +$ sudo chown aorth /export/apps/quast/5.0.2 
-$ module load python/3.5 +python3 -m venv /export/apps/quast/5.0.2 
-python -m venv /export/apps/quast/4.+source /export/apps/quast/5.0.2/bin/activate 
-/export/apps/quast/4.5/bin/activate +$ pip install --upgrade pip setuptools
-$ pip install --upgrade setuptools pip+
 $ pip install matplotlib $ pip install matplotlib
 $ ./setup.py install_full $ ./setup.py install_full
-$ sudo chown -R root:root /export/apps/quast/4.5</code>+$ ./setup.py test 
 +$ sudo chown -R root:root /export/apps/quast/5.0.2</code>
  
 You can test the installation using the test data from the source tarball: You can test the installation using the test data from the source tarball:
  
 <code>$ quast.py test_data/contigs_1.fasta test_data/contigs_2.fasta -R test_data/reference.fasta.gz -G test_data/genes.gff</code> <code>$ quast.py test_data/contigs_1.fasta test_data/contigs_2.fasta -R test_data/reference.fasta.gz -G test_data/genes.gff</code>
quast-software.1548772277.txt.gz · Last modified: 2019/01/29 14:31 by aorth