User Tools

Site Tools



This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Next revision Both sides next revision
quast-software [2015/07/27 08:38]
quast-software [2015/08/04 20:59]
aorth [quast]
Line 1: Line 1:
 ====== quast ====== ====== quast ======
-QUAST(QUality ASsessment Tool)evaluates genome assemblies by computing various metrics.+QUAST (QUality ASsessment Tool) evaluates genome assemblies by computing various metrics.
 ===== Information ===== ===== Information =====
Line 16: Line 16:
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
-<code>wget "" -O quast-3.0.tar.gz +<code>wget "" -O quast-3.0.tar.gz 
-tar -xvf quast-3.0.tar.gz +tar -xvf quast-3.0.tar.gz 
-sudo mkdir -p /export/apps/quast/3.0 +sudo mkdir -p /export/apps/quast/3.0 
-sudo cp -rv quast-3.0/* /export/apps/quast/3.0 +sudo cp -rv quast-3.0/* /export/apps/quast/3.0 
-sudo chown -R joguya:joguya /export/apps/quast/3.0 +sudo chown -R joguya:joguya /export/apps/quast/3.0 
-cd /export/apps/quast/3.0 +cd /export/apps/quast/3.0 
-module load python/2.7.8 +module load python/2.7.8 
-cd libs/MUMmer3.23-linux +cd libs/MUMmer3.23-linux 
-make +make 
-cd - +cd - 
-./ --test +./ --test 
-sudo chown -R root:root /export/apps/quast/3.0 +sudo chown -R root:root /export/apps/quast/3.0</code>
 ===== Running ===== ===== Running =====
quast-software.txt · Last modified: 2020/04/07 08:27 by aorth