quast-software
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quast-software [2015/07/27 08:25] – joguya | quast-software [2017/10/04 05:03] – aorth | ||
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====== quast ====== | ====== quast ====== | ||
+ | QUAST (QUality ASsessment Tool) evaluates genome assemblies by computing various metrics. | ||
===== Information ===== | ===== Information ===== | ||
Line 6: | Line 6: | ||
* Added: September, 2014 | * Added: September, 2014 | ||
* Updated: July, 2015 | * Updated: July, 2015 | ||
- | * Link: http://bioinf.spbau.ru/en/quast | + | * Link: http://quast.sourceforge.net/quast |
===== Usage ===== | ===== Usage ===== | ||
Line 16: | Line 16: | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | tar -xvf quast-3.0.tar.gz | + | $ tar -xvf quast-3.0.tar.gz |
- | sudo mkdir -p / | + | $ sudo mkdir -p / |
- | sudo cp -rv quast-3.0/* / | + | $ sudo cp -rv quast-3.0/* / |
- | sudo chown -R joguya: | + | $ sudo chown -R joguya: |
- | cd / | + | $ cd / |
- | module load python/ | + | $ module load python/ |
- | cd libs/ | + | $ cd libs/ |
- | make | + | $ make |
- | cd - | + | $ cd - |
- | ./ | + | $ ./ |
- | sudo chown -R root:root / | + | $ sudo chown -R root:root / |
- | </ | + | |
===== Running ===== | ===== Running ===== |
quast-software.txt · Last modified: 2020/04/07 08:27 by aorth