Differences

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--- quast-software [2017/10/04 07:09] – aorth
+++ quast-software [2020/04/07 08:27] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest Version: 3.0
+  * Latest Version: 5.0.2
   * Added: September, 2014
-  * Updated: September, 2017
+  * Updated: April, 2020
   * Link: http://quast.sourceforge.net/quast
@@ Line 15: / Line 15: @@
 Load one version into your environment and run it:
-<code>$ module load quast/4.5
+<code>$ module load quast/5.0.2
 $ quast.py --help</code>
@@ Line 22: / Line 22: @@
 <code>$ cd /tmp
-$ wget https://downloads.sourceforge.net/project/quast/quast-4.5.tar.gz
+$ wget https://downloads.sourceforge.net/project/quast/quast-5.0.2.tar.gz
-$ tar xf quast-4.5.tar.gz
+$ tar xf quast-5.0.2.tar.gz
-$ cd quast-4.5
+$ cd quast-5.0.2
-$ sudo mkdir -p /export/apps/quast/4.5
+$ sudo mkdir -p /export/apps/quast/5.0.2
-$ sudo chown aorth /export/apps/quast/4.5
+$ sudo chown aorth /export/apps/quast/5.0.2
-$ $ module load python/3.5.3
+$ python3 -m venv /export/apps/quast/5.0.2
-$ python -m venv /export/apps/quast/4.5
+$ source /export/apps/quast/5.0.2/bin/activate
-$ . /export/apps/quast/4.5/bin/activate
+$ pip install --upgrade pip setuptools
-$ pip install -U setuptools pip
+$ pip install matplotlib
 $ ./setup.py install_full
-$ sudo chown -R root:root /export/apps/quast/4.5</code>
+$ ./setup.py test
+$ sudo chown -R root:root /export/apps/quast/5.0.2</code>
 You can test the installation using the test data from the source tarball:
 <code>$ quast.py test_data/contigs_1.fasta test_data/contigs_2.fasta -R test_data/reference.fasta.gz -G test_data/genes.gff</code>