qiime2-software
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Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
qiime2-software [2018/07/22 16:21] – aorth | qiime2-software [2021/10/05 15:34] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: May, 2018 | * Added: May, 2018 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
Line 16: | Line 16: | ||
Load a particular version into your environment and run it: | Load a particular version into your environment and run it: | ||
- | < | + | < |
$ qiime --help</ | $ qiime --help</ | ||
Line 22: | Line 22: | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ sudo mkdir /export/apps/qiime2 | + | $ rpm --rebuilddb --root=/ |
- | $ sudo chown aorth: | + | $ wget https:// |
- | $ wget https:// | + | $ sudo rpm --root=/var/tmp/chroot/ |
- | $ bash Miniconda3-latest-Linux-x86_64.sh -p / | + | $ sudo yum --installroot=/var/tmp/chroot/ |
- | $ source | + | $ sudo cp / |
- | $ conda update -n base conda | + | $ sudo mount --bind /dev/ / |
- | $ wget https:// | + | $ sudo mount -t proc procfs / |
- | $ conda env create -p / | + | $ sudo mount -t sysfs sysfs / |
- | $ conda activate / | + | $ sudo chroot / |
- | $ sudo chown -R root:root / | + | # wget https:// |
- | $ qiime --help</ | + | # bash Miniconda3-latest-Linux-x86_64.sh |
+ | # eval "$(/ | ||
+ | # conda update -n base conda | ||
+ | # wget https:// | ||
+ | # conda env create -p / | ||
+ | # conda activate / | ||
+ | # env > conda-qiime2-2021.8 | ||
+ | # exit | ||
+ | $ sudo mkdir -p / | ||
+ | $ sudo chown aorth / | ||
+ | $ rsync -av / | ||
+ | $ sudo chown -R root:root / | ||
+ | $ sudo umount / | ||
- | Qiime2 | + | QIIME2 |
To create the [[https:// | To create the [[https:// |
qiime2-software.txt · Last modified: 2021/10/05 15:34 by aorth