Differences

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--- pspp [2009/11/23 08:04] – 172.26.0.166
+++ pspp [2009/11/30 13:38] – 172.26.0.166
@@ Line 10: / Line 10: @@
 sspro :  http://download.igb.uci.edu/
+PRODIV-TMHMM :
+FIEFDom : http://www.bhsai.org/downloads/fiefdom/
+<file>
+Edit the paths in 'configure.txt' (in the 'data' folder) for the platform on which
+   the program is being run.
+   BLASTPGP - should point to the 'bin' directory (including the '\' or '/' in the end)
+              containing the 'blastpgp' executable.
+   DATABASE- should point to the name of the BLAST parseable database.
+Change the file permissions of the executable by running  'chmod FEIFDomLIN.exe 755' for
+  the Linux version.
+</file>
+Running FIEFDom
+<code>FIEFDom<WIN/LIN>.exe <input.fasta></code>
+Rosetta and PyRosetta Software
+Rosetta Software Logo from Baker Laboratory
+Rosetta is a molecular modeling software package for understanding protein structures, protein design, protein docking, protein-DNA and protein-protein interactions. The Rosetta software contains multiple functional modules, including Rosetta ab initio, RosettaNMR, RosettaDesign, RosettaDock, Rosetta Fragment Selection, Rosetta Nucleic Acids, RosettaLigand, and more.
+./prospect_ssp.LINUX -prospect_path /home/magochi/src/PSPP/pspp_1.0/prospect/prospect -seqfile /home/magochi/seq.fasta