prokka-software
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
prokka-software [2020/09/18 11:47] – aorth | prokka-software [2022/06/30 17:42] – aorth | ||
---|---|---|---|
Line 9: | Line 9: | ||
* Added: February, 2017 | * Added: February, 2017 | ||
* Updated: May, 2020 | * Updated: May, 2020 | ||
- | * Link: http://www.vicbioinformatics.com/software.prokka.shtml | + | * Link: https://github.com/tseemann/prokka |
===== Usage ===== | ===== Usage ===== | ||
Line 30: | Line 30: | ||
$ tar xf v1.14.6.tar.gz | $ tar xf v1.14.6.tar.gz | ||
$ cd prokka-1.14.6 | $ cd prokka-1.14.6 | ||
- | $ module load perl/5.28.2 | ||
$ mkdir perl5 | $ mkdir perl5 | ||
$ cpanm -l perl5 Time::Piece XML::Simple Digest::MD5 Module:: | $ cpanm -l perl5 Time::Piece XML::Simple Digest::MD5 Module:: | ||
Line 43: | Line 42: | ||
</ | </ | ||
- | **Note 1:** Prokka only says that it requires BioPerl, but the BioPerl distribution frowns upon requiring the entire distribution. Here I have attempted to guess which modules are needed by checking the actual Perl " | + | **Note 1:** Prokka only says that it requires |
**Note 2:** You can try without %%'' | **Note 2:** You can try without %%'' |
prokka-software.txt · Last modified: 2023/08/09 06:46 by aorth