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--- prokka-software [2020/05/17 13:12] – aorth
+++ prokka-software [2020/05/17 13:18] – aorth
@@ Line 25: / Line 25: @@
 <code>$ cd /tmp
-$ git clone https://github.com/tseemann/prokka.git -b v1.14.6
+$ wget https://github.com/tseemann/prokka/archive/v1.14.6.tar.gz
-$ cd prokka
+$ tar xf v1.14.6.tar.gz
-$ git checkout v1.14.6
+$ cd prokka-1.14.6
 $ module load perl/5.28.2
 $ mkdir perl5
@@ Line 39: / Line 39: @@
 </code>
-*Note:* You can try without %%''--force''%% if you want, but many Perl modules "bail out" during installation because one out of a few hundred (or thousand) obscure or comprehensive tests fail.
+**Note 1:** Prokka only says that it requires BioPerl, but the BioPerl distribution frowns upon requiring the entire distribution. Here I have attempted to guess which modules are needed by checking the actual Perl "use" statements.
+**Note 2:** You can try without %%''--force''%% if you want, but many Perl modules "bail out" during installation because one out of a few hundred (or thousand) obscure or comprehensive tests fail.