Differences

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--- presto-software [2017/05/30 21:20] – aorth
+++ presto-software [2020/03/15 11:54] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 0.5.3
+  * Version: 0.5.13
   * Added: June, 2016
-  * Updated: May, 2017
+  * Updated: March, 2020
-  * Link: http://presto.readthedocs.io
+  * Link: https://presto.readthedocs.io
 ===== Usage =====
@@ Line 15: / Line 15: @@
 Load a version of presto into your environment:
-<code>$ module load presto/0.5.3</code>
+<code>$ module load presto/0.5.13</code>
 ===== Installation ======
@@ Line 21: / Line 21: @@
 Notes from the sysadmin during installation:
-<code>$ scl enable devtoolset-2 bash
+<code>$ scl enable devtoolset-7 bash
-$ module load python/3.4.3
+$ sudo mkdir -p /export/apps/presto/0.5.13
-$ sudo mkdir /export/apps/presto/0.5.3
+$ sudo chown aorth /export/apps/presto/0.5.13
-$ sudo chown aorth /export/apps/presto/0.5.3
+$ python3.6m -m venv /export/apps/presto/0.5.13
-$ python -m venv /export/apps/presto/0.5.3
+$ source /export/apps/presto/0.5.13/bin/activate
-$ . /export/apps/presto/0.5.3/bin/activate
+$ pip install --upgrade setuptools pip
-$ pip install -U pip setuptools
-$ pip install -U Cython
-$ pip install -U numpy scipy pandas biopython
 $ pip install presto
-$ sudo chown -R root:root /export/apps/presto/0.5.3</code>
+$ sudo chown -R root:root /export/apps/presto/0.5.13</code>