ILRI Research Computing

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====== pplacer ======

Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis.

===== Information =====

  * Version: 1.1.alpha19
  * Added: March, 2020
  * Link: https://matsen.fhcrc.org/pplacer/

===== Usage =====

See which versions of pplacer are available:
<code>$ module avail pplacer</code>

Load one version into your environment and run it:
<code>$ module load pplacer/1.1.alpha19
$ pplacer
$ guppy
$ rppr</code>

===== Installation ======

Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/matsen/pplacer/releases/download/v1.1.alpha19/pplacer-linux-v1.1.alpha19.zip
$ unzip pplacer-linux-v1.1.alpha19.zip
$ sudo mkdir -p /export/apps/pplacer
$ sudo cp -r pplacer-Linux-v1.1.alpha19 /export/apps/pplacer/1.1.alpha19</code>