User Tools

Site Tools


porechop-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

porechop-software [2020/02/27 11:12] – created aorthporechop-software [2023/02/23 06:39] (current) aorth
Line 5: Line 5:
 ===== Information ===== ===== Information =====
  
-  * Version: 0.2.4+  * Version: 0.3.2pre
   * Added: February, 2020   * Added: February, 2020
-  * Link: https://github.com/rrwick/Porechop+  * Updated: February, 2023 
 +  * Link: https://github.com/artic-network/Porechop 
 + 
 +//Note:// the original repository was [[https://github.com/rrwick/Porechop|rrwick/Porechop]] but it was discontinued. The project was forked and continued by artic-network.
  
 ===== Usage ===== ===== Usage =====
  
-See which versions of porechop are available:+See which versions are available:
 <code>$ module avail porechop</code> <code>$ module avail porechop</code>
  
 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load porechop/0.2.4+<code>$ module load porechop/0.3.2pre
 $ porechop</code> $ porechop</code>
  
Line 22: Line 25:
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ git clone https://github.com/rrwick/Porechop.git -b v0.2.+<code>$ git clone https://github.com/artic-network/Porechop.git -b v0.3.2pre 
-$ cd Porechop +$ sudo mkdir -p /export/apps/porechop/0.3.2pre 
-$ sudo mkdir -p /export/apps/porechop/0.2.4 +$ sudo chown aorth /export/apps/porechop/0.3.2pre 
-$ sudo chown aorth /export/apps/porechop/0.2.4 +module load python/3.8 
-python3 -m venv /export/apps/porechop/0.2.4 +$ python -m venv /export/apps/porechop/0.3.2pre 
-$ source /export/apps/porechop/0.2.4/bin/activate +$ source /export/apps/porechop/0.3.2pre/bin/activate 
-scl enable devtoolset-7 bash +pip install --upgrade setuptools pip wheel 
-python3 setup.py install +$ source /export/apps/porechop/0.3.2pre/bin/activate 
-$ sudo chown -R root:root /export/apps/porechop/0.2.4</code>+python setup.py install 
 +$ sudo chown -R root:root /export/apps/porechop/0.3.2pre</code>
porechop-software.1582801966.txt.gz · Last modified: 2020/02/27 11:12 by aorth