population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data
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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/04/29 15:02] – [Qiime2 data filtering and feature (OTU) table construction] bngina | population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/04/29 15:09] (current) – [Qiime2 data filtering and feature (OTU) table construction] bngina | ||
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qiime dada2 denoise-paired \ | qiime dada2 denoise-paired \ | ||
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- | #next summarise the features table and view, | + | #summarise the features table to view it, |
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- | time qiime feature-table summarize \ | + | qiime feature-table summarize \ |
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#view a summary of the rep sequences | #view a summary of the rep sequences | ||
- | time qiime feature-table tabulate-seqs \ | + | qiime feature-table tabulate-seqs \ |
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#and also view the denoising statistics | #and also view the denoising statistics | ||
- | time qiime metadata tabulate \ | + | qiime metadata tabulate \ |
- | --m-input-file | + | --m-input-file /home/ |
- | --o-visualization | + | --o-visualization /home/ |
</ | </ |
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina