population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data
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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/04/29 13:35] – bngina | population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/04/29 14:53] – [Qiime2 data filtering and feature (OTU) table construction] bngina | ||
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- | The data we are using is paired-end, hence we will use the [[https:// | + | The data we are using is paired-end, hence we will use the [[https:// |
- | A key parameter to be careful is the //'' | + | A key parameter to be careful |
- | Key parameters in quality control of the sequences are those used to trim the forward, '' | + | |
+ | The other key parameters in quality control of the sequences are those used to trim the forward, '' | ||
+ | |||
+ | To determine what values to pass for these two parameters; | ||
+ | *Review the Interactive Quality Plot tab in the //'' | ||
+ | *The expected fragment size after the reads are joined, particularly for the //'' |
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina