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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data

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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 14:23] – [Importing data into Qiime2] bnginapopulation-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 14:49] – bngina
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  --o-visualization /home/mydir/qiime2_data/my_raw_data.qzv  --o-visualization /home/mydir/qiime2_data/my_raw_data.qzv
 </code> </code>
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 +==== Qiime2 data filtering and feature (OTU) table construction ====
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 +Qiime2 provides two pluggins/methods for filtering your sequences to the required quality and length and from these construct featuretables better known as OTU tables and the representative feature sequences. These are [[https://www.ncbi.nlm.nih.gov/pubmed/27214047| Dada2]] and [[ https://msystems.asm.org/content/2/2/e00191-16| Deblur]]. 
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population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina