Differences

This shows you the differences between two versions of the page.

--- population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 14:20] – bngina
+++ population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 14:49] – bngina
@@ Line 30: / Line 30: @@
 </code>
-We mentioned that qiime2 provides method to summarize and view artifacts by storing them as visualizations, .qzv, files. To view the imported data;
+We mentioned that qiime2 provides method to summarize and view artifacts by storing them as visualizations, .qzv, files. The ''.qzv''  files can be opened on any browser using [[https://view.qiime2.org/ |qiime viewer]]. To create visualization for the imported data;
 <code>
@@ Line 38: / Line 38: @@
  --o-visualization /home/mydir/qiime2_data/my_raw_data.qzv
 </code>
+==== Qiime2 data filtering and feature (OTU) table construction ====
+Qiime2 provides two pluggins/methods for filtering your sequences to the required quality and length and from these construct featuretables better known as OTU tables and the representative feature sequences. These are [[https://www.ncbi.nlm.nih.gov/pubmed/27214047| Dada2]] and [[ https://msystems.asm.org/content/2/2/e00191-16| Deblur]].