User Tools

Site Tools


population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revisionBoth sides next revision
population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:45] bnginapopulation-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:48] bngina
Line 13: Line 13:
 Read more about [[ https://docs.qiime2.org/2020.2/tutorials/importing/|different data types and importing them into qiime2]] for anlaysis. We will be importing data described as type //Cassava 1.8 paired-end de-multiplexed fastq//. Read more about [[ https://docs.qiime2.org/2020.2/tutorials/importing/|different data types and importing them into qiime2]] for anlaysis. We will be importing data described as type //Cassava 1.8 paired-end de-multiplexed fastq//.
  
-Import data as follows:+To import fastq files;
  
 <code> <code>
 +
 +#i create a directory to store all my ''.qza'' artefact and the related visualizations i.e ''.qzv''.
 qiime tools import \ qiime tools import \
  --type 'SampleData[PairedEndSequencesWithQuality]' \  --type 'SampleData[PairedEndSequencesWithQuality]' \
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina