population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data
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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:44] – bngina | population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 14:20] – bngina | ||
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Read more about [[ https:// | Read more about [[ https:// | ||
- | Import data as follows: | + | To import fastq files; |
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+ | < | ||
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+ | #i create a directory to store all my artifact i.e ' | ||
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+ | mkdir / | ||
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+ | #import the fastq files | ||
- | '' | ||
qiime tools import \ | qiime tools import \ | ||
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- | '' | + | </ |
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+ | We mentioned that qiime2 provides method to summarize and view artifacts by storing them as visualizations, | ||
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+ | < | ||
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+ | qiime demux summarize \ | ||
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+ | --o-visualization / | ||
+ | </ |
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina