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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data

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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:44] – bnginapopulation-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:48] – bngina
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 Read more about [[ https://docs.qiime2.org/2020.2/tutorials/importing/|different data types and importing them into qiime2]] for anlaysis. We will be importing data described as type //Cassava 1.8 paired-end de-multiplexed fastq//. Read more about [[ https://docs.qiime2.org/2020.2/tutorials/importing/|different data types and importing them into qiime2]] for anlaysis. We will be importing data described as type //Cassava 1.8 paired-end de-multiplexed fastq//.
  
-Import data as follows:+To import fastq files;
  
-''+<code> 
 + 
 +#i create a directory to store all my ''.qza'' artefact and the related visualizations i.e ''.qzv''.
 qiime tools import \ qiime tools import \
  --type 'SampleData[PairedEndSequencesWithQuality]' \  --type 'SampleData[PairedEndSequencesWithQuality]' \
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  --input-format CasavaOneEightSingleLanePerSampleDirFmt \  --input-format CasavaOneEightSingleLanePerSampleDirFmt \
  --output-path /home/bngina/Fellows/Yves_Tchiechoua/qiime2_data/yves_data1.qza  --output-path /home/bngina/Fellows/Yves_Tchiechoua/qiime2_data/yves_data1.qza
-''+</code>
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina