ILRI Research Computing

User Tools

Site Tools

You are here: start » population-diversity » microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data
population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
Next revisionBoth sides next revision
population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:26] – [Importing data into Qiime2] bnginapopulation-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:45] – bngina
Line 12: Line 12:
  
 Read more about [[ https://docs.qiime2.org/2020.2/tutorials/importing/|different data types and importing them into qiime2]] for anlaysis. We will be importing data described as type //Cassava 1.8 paired-end de-multiplexed fastq//. Read more about [[ https://docs.qiime2.org/2020.2/tutorials/importing/|different data types and importing them into qiime2]] for anlaysis. We will be importing data described as type //Cassava 1.8 paired-end de-multiplexed fastq//.
 +
 +Import data as follows:
 +
 +<code>
 +qiime tools import \
 + --type 'SampleData[PairedEndSequencesWithQuality]' \
 + --input-path /home/bngina/Fellows/Yves_Tchiechoua/orig_data \
 + --input-format CasavaOneEightSingleLanePerSampleDirFmt \
 + --output-path /home/bngina/Fellows/Yves_Tchiechoua/qiime2_data/yves_data1.qza
 +</code>
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina