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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data

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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:26] – [Importing data into Qiime2] bnginapopulation-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:44] – bngina
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 Read more about [[ https://docs.qiime2.org/2020.2/tutorials/importing/|different data types and importing them into qiime2]] for anlaysis. We will be importing data described as type //Cassava 1.8 paired-end de-multiplexed fastq//. Read more about [[ https://docs.qiime2.org/2020.2/tutorials/importing/|different data types and importing them into qiime2]] for anlaysis. We will be importing data described as type //Cassava 1.8 paired-end de-multiplexed fastq//.
 +
 +Import data as follows:
 +
 +''
 +qiime tools import \
 + --type 'SampleData[PairedEndSequencesWithQuality]' \
 + --input-path /home/bngina/Fellows/Yves_Tchiechoua/orig_data \
 + --input-format CasavaOneEightSingleLanePerSampleDirFmt \
 + --output-path /home/bngina/Fellows/Yves_Tchiechoua/qiime2_data/yves_data1.qza
 +''
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina