population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:24] – [Importing data into Qiime2] bngina | population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:52] – [Importing data into Qiime2] bngina | ||
---|---|---|---|
Line 11: | Line 11: | ||
We import raw fastq files into qiime2. Depending on the sequencing platform used to generate the data, you will have data that has been de-multiplexed into sample specif fastq files, or not. The MiSeq platform at [[ https:// | We import raw fastq files into qiime2. Depending on the sequencing platform used to generate the data, you will have data that has been de-multiplexed into sample specif fastq files, or not. The MiSeq platform at [[ https:// | ||
- | Read more about different data types and importing them into qiime2 for anlaysis. We will be importing data described as type // Cassava 1.8 paired-end | + | Read more about [[ https:// |
+ | |||
+ | To import fastq files; | ||
+ | |||
+ | < | ||
+ | |||
+ | #i create a directory to store all my artefact i.e ' | ||
+ | |||
+ | mkdir / | ||
+ | |||
+ | #import the fastq files | ||
+ | |||
+ | qiime tools import \ | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | </ |
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina