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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data

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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/28 11:27] – [Importing data into Qiime2] bnginapopulation-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/28 11:28] bngina
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 [[https://docs.qiime2.org/2020.2/concepts/|Data]] used and produced by qiime2 are stored as artifacts. Artifacts contain data and metadata and have a ''.qza'' extension. Qiime2 provides methods to view information (data and metadata) stored in artifacts by creating visualizations, that have a ''.qzv'' extension.  [[https://docs.qiime2.org/2020.2/concepts/|Data]] used and produced by qiime2 are stored as artifacts. Artifacts contain data and metadata and have a ''.qza'' extension. Qiime2 provides methods to view information (data and metadata) stored in artifacts by creating visualizations, that have a ''.qzv'' extension. 
  
-We import raw fastq files into qiime2. Depending on the sequencing platform used to generate the data, you will have data that has been de-multiplexed into sample specif fastq files, or not. The Miseq plaform at BecA-ILRI Hub will demultiplex the data and we get sample specific fastq files.+We import raw fastq files into qiime2. Depending on the sequencing platform used to generate the data, you will have data that has been de-multiplexed into sample specif fastq files, or not. The MiSeq platform at [[ https://hub.africabiosciences.org/BecA-ILRI Hub]] will de-multiplex the data and we get sample specific fastq files.
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina