population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data
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population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/28 10:38] – bngina | population-diversity:microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data [2020/03/30 13:48] – bngina | ||
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====== Analysis of Microbiome data ====== | ====== Analysis of Microbiome data ====== | ||
- | [[https:// | + | Micriobial analysis aims to understand microbes and their functions in their environments. |
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+ | We outline a pipeline to analyse 16S/18S paired-end sequencing data. Qiime2 can be used to analyse single-end and paired-end data. | ||
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+ | ==== Importing data into Qiime2 ==== | ||
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+ | [[https:// | ||
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+ | We import raw fastq files into qiime2. Depending on the sequencing platform used to generate the data, you will have data that has been de-multiplexed into sample specif fastq files, or not. The MiSeq platform at [[ https:// | ||
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+ | Read more about [[ https:// | ||
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+ | To import fastq files; | ||
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+ | < | ||
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+ | #i create a directory to store all my '' | ||
+ | qiime tools import \ | ||
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+ | </ |
population-diversity/microbiome-analysis-with-qiime2-using-illumina-paired-end-sequence-data.txt · Last modified: 2020/04/29 15:09 by bngina