plink-software
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plink-software [2015/11/24 13:28] – joguya | plink-software [2019/12/09 09:10] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
- | * Added: | + | * Added: |
- | * Updated: | + | * Updated: |
- | * Link: https:// | + | * Link: https:// |
===== Usage ===== | ===== Usage ===== | ||
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< | < | ||
- | Load and run plink: | + | Load one version into your environment |
- | < | + | < |
- | $ plink</ | + | $ plink2</ |
+ | |||
+ | **Note:** If you are running your job on a newer compute node like compute05 you can run '' | ||
===== Installation ====== | ===== Installation ====== | ||
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< | < | ||
- | $ wget https://www.cog-genomics.org/static/ | + | $ wget http://s3.amazonaws.com/plink2-assets/plink2_linux_x86_64_20191128.zip |
- | $ mkdir plink-1.90 | + | $ sudo mkdir / |
- | $ cd plink-1.90 | + | $ sudo cp plink2 / |
- | $ unzip ../plink_linux_x86_64.zip | + | $ rm plink2 |
- | $ sudo mkdir / | + | $ wget http://s3.amazonaws.com/ |
- | $ sudo cp . / | + | $ unzip plink2_linux_avx2_20191128.zip |
- | </ | + | $ sudo cp plink2 |
+ | |||
+ | The AVX2 build only runs on compute05. The rest of our compute nodes are too old and must use the 64-bit builds. |
plink-software.1448371705.txt.gz · Last modified: 2015/11/24 13:28 by joguya